Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_007148-T1 | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN |
OS493_007149-T1 | |
OS493_007150-T1 | ARMADILLO-TYPE FOLD-RELATED |
OS493_007151-T1 | ARMADILLO-TYPE FOLD-RELATED |
OS493_007152-T1 | |
OS493_007153-T1 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
OS493_007155-T1 | |
OS493_007157-T1 | CUB DOMAIN-CONTAINING PROTEIN |
OS493_007158-T1 | |
OS493_007159-T1 | EXPRESSED PROTEIN |
OS493_007160-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_007161-T1 | FTP DOMAIN-CONTAINING PROTEIN |
OS493_007162-T1 | CUB DOMAIN-CONTAINING PROTEIN |
OS493_007163-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_007164-T1 | |
OS493_007166-T1 | OS06G0237300 PROTEIN |
OS493_007167-T1 | |
OS493_007169-T1 | DIHYDROOROTASE-RELATED |
OS493_007170-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_007171-T1 | DIHYDROOROTASE-RELATED |
OS493_007172-T1 | DIHYDROOROTASE-RELATED |
OS493_007173-T1 | |
OS493_007174-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_007175-T1 | FAS-ASSOCIATED PROTEIN |
OS493_007176-T1 | ACYL-COA DEHYDROGENASE |
OS493_007177-T1 | ACYL-COA DEHYDROGENASE |
OS493_007178-T1 | |
OS493_007179-T1 | |
OS493_007180-T1 | |
OS493_007181-T1 | |
OS493_007182-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
OS493_007183-T1 | SCP160 |
OS493_007184-T1 | |
OS493_007185-T1 | DNA-DIRECTED RNA POLYMERASE III |
OS493_007186-T1 | PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
OS493_007187-T1 | PROLIFERATING CELL NUCLEAR ANTIGEN |
OS493_007188-T1 | AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED |
OS493_007189-T1 | |
OS493_007190-T1 | 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 |
OS493_007191-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_007192-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_007194-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_007196-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_007197-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_007198-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_007199-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_007201-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_007202-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_007203-T1 | |
OS493_007206-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |