Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_006795-T1 | PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE |
OS493_006796-T1 | PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE |
OS493_006797-T1 | UNCHARACTERIZED |
OS493_006798-T1 | CHARGED MULTIVESICULAR BODY PROTEIN |
OS493_006800-T1 | UNCHARACTERIZED |
OS493_006801-T1 | |
OS493_006802-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_006803-T1 | |
OS493_006804-T1 | |
OS493_006805-T1 | |
OS493_006806-T1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 |
OS493_006807-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
OS493_006808-T1 | |
OS493_006809-T1 | UNCHARACTERIZED |
OS493_006811-T1 | ALANYL-TRNA EDITING PROTEIN |
OS493_006812-T1 | |
OS493_006813-T1 | |
OS493_006815-T1 | |
OS493_006817-T1 | TIMEOUT/TIMELESS-2 |
OS493_006818-T1 | PENTRAXIN |
OS493_006819-T1 | |
OS493_006820-T1 | POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED |
OS493_006821-T1 | |
OS493_006822-T1 | UNCHARACTERIZED |
OS493_006823-T1 | CADHERIN-87A |
OS493_006824-T1 | CYTOCHROME P450 FAMILY 4 |
OS493_006825-T1 | |
OS493_006826-T1 | |
OS493_006827-T1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
OS493_006828-T1 | CYTOCHROME P450 FAMILY 4 |
OS493_006829-T1 | |
OS493_006830-T1 | |
OS493_006831-T1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
OS493_006832-T1 | CARNITINE O-ACYLTRANSFERASE |
OS493_006833-T1 | GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT |
OS493_006834-T1 | TRANSMEMBRANE PROTEIN |
OS493_006835-T1 | TRANSMEMBRANE PROTEIN |
OS493_006836-T1 | TESTIS-EXPRESSED PROTEIN 49 |
OS493_006837-T1 | UNCHARACTERIZED |
OS493_006838-T1 | |
OS493_006839-T1 | PRE-MRNA-SPLICING FACTOR CWF18 |
OS493_006840-T1 | STI2 PROTEIN-RELATED |
OS493_006841-T1 | STI2 PROTEIN-RELATED |
OS493_006842-T1 | STI2 PROTEIN-RELATED |
OS493_006844-T1 | CRUMBS FAMILY MEMBER |
OS493_006845-T1 | |
OS493_006846-T1 | CRUMBS FAMILY MEMBER |
OS493_006847-T1 | |
OS493_006848-T1 | PROTEIN CBG18546 |
OS493_006849-T1 | HEAT SHOCK 70 KDA PROTEIN 14 |