Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_006502-T1 | |
OS493_006503-T1 | |
OS493_006504-T1 | |
OS493_006505-T1 | |
OS493_006506-T1 | |
OS493_006507-T1 | |
OS493_006508-T1 | |
OS493_006509-T1 | INACTIVE POLYGLYCYLASE TTLL10 |
OS493_006510-T1 | NLPC_P60 DOMAIN-CONTAINING PROTEIN |
OS493_006511-T1 | CELL DIVISION CYCLE-ASSOCIATED PROTEIN 3 |
OS493_006512-T1 | UNCHARACTERIZED |
OS493_006513-T1 | |
OS493_006514-T1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
OS493_006515-T1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
OS493_006516-T1 | E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER |
OS493_006517-T1 | |
OS493_006518-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_006519-T1 | ELONGATOR COMPLEX PROTEIN 5 |
OS493_006520-T1 | UNCHARACTERIZED |
OS493_006521-T1 | NUDIX HYDROLASE |
OS493_006522-T1 | GLUTATHIONE S-TRANSFERASE KAPPA |
OS493_006523-T1 | |
OS493_006524-T1 | PROTEIN AF-9 HOMOLOG |
OS493_006525-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_006526-T1 | BETA-ALANINE-ACTIVATING ENZYME |
OS493_006527-T1 | ALDO/KETO REDUCTASE |
OS493_006528-T1 | |
OS493_006529-T1 | FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN |
OS493_006530-T1 | UNCHARACTERIZED |
OS493_006532-T1 | |
OS493_006533-T1 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
OS493_006534-T1 | THYROTROPIN-RELEASING HORMONE RECEPTOR |
OS493_006535-T1 | MKRN2 OPPOSITE STRAND PROTEIN |
OS493_006536-T1 | |
OS493_006537-T1 | MITOCHONDRIAL ATPASE COMPLEX SUBUNIT ATP10 |
OS493_006538-T1 | TRANSMEMBRANE PROTEIN 107 |
OS493_006539-T1 | |
OS493_006540-T1 | |
OS493_006541-T1 | |
OS493_006542-T1 | FIBRILLIN-RELATED |
OS493_006543-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_006544-T1 | FIBRILLIN-RELATED |
OS493_006545-T1 | |
OS493_006546-T1 | |
OS493_006547-T1 | PA14 DOMAIN-CONTAINING PROTEIN |
OS493_006548-T1 | |
OS493_006549-T1 | FTP DOMAIN-CONTAINING PROTEIN |
OS493_006550-T1 | FTP DOMAIN-CONTAINING PROTEIN |
OS493_006551-T1 | FIBRILLIN-RELATED |
OS493_006552-T1 | SPERM ASSOCIATED ANTIGEN 7 |