About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_006339-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
OS493_006340-T1
OS493_006341-T1SERINE-THREONINE PROTEIN KINASE
OS493_006342-T1
OS493_006343-T1
OS493_006344-T1
OS493_006345-T1
OS493_006346-T1
OS493_006347-T1
OS493_006348-T1
OS493_006349-T1
OS493_006350-T1
OS493_006351-T1
OS493_006352-T1
OS493_006353-T1MYOSIN LIGHT CHAIN 1, 3
OS493_006354-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_006355-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_006356-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_006358-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_006359-T1CONTACTIN 5
OS493_006360-T1BASIGIN RELATED
OS493_006361-T1
OS493_006362-T1FOLLISTATIN-RELATED
OS493_006363-T1UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE
OS493_006364-T1FOLLISTATIN-RELATED
OS493_006365-T1DDB1- AND CUL4-ASSOCIATED FACTOR 10
OS493_006366-T1TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10
OS493_006367-T1SURFACE ANTIGEN BSPA-LIKE-RELATED
OS493_006369-T1
OS493_006370-T1
OS493_006371-T1ARMADILLO REPEAT-CONTAINING PROTEIN 3
OS493_006372-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 150
OS493_006373-T150S RIBOSOMAL PROTEIN L9
OS493_006374-T1RE38146P
OS493_006375-T1RE38146P
OS493_006376-T1VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A
OS493_006377-T1CONTACTIN 5
OS493_006378-T1E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER
OS493_006379-T1CELLULAR TUMOR ANTIGEN P53
OS493_006380-T1LEUCINE RICH REPEAT PROTEIN
OS493_006381-T1
OS493_006382-T1
OS493_006383-T1
OS493_006384-T1
OS493_006385-T1ATPASE
OS493_006386-T1PROTEIN PHOSPHATASE 2C
OS493_006387-T1DNA LIGASE 1/3 FAMILY MEMBER
OS493_006388-T1DNA LIGASE 1/3 FAMILY MEMBER
OS493_006389-T1
OS493_006390-T1
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