About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_006186-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_006188-T1
OS493_006189-T1
OS493_006190-T1
OS493_006191-T1ATP-DEPENDENT RNA HELICASE DBP3
OS493_006192-T1FAS-ASSOCIATED PROTEIN
OS493_006193-T1TUMOR NECROSIS FACTOR RECEPTOR
OS493_006194-T1MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S22
OS493_006195-T1XYLOSIDE XYLOSYLTRANSFERASE 1
OS493_006196-T1TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR
OS493_006197-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
OS493_006198-T1
OS493_006199-T1
OS493_006200-T1METALLOPROTEASE TLDD
OS493_006201-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_006202-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_006203-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_006204-T1RECEPTOR TRANSPORTING PROTEIN
OS493_006205-T1DNA POLYMERASE III SUBUNIT EPSILON
OS493_006206-T1DYNAMIN
OS493_006207-T1
OS493_006208-T1PROTEIN LZIC
OS493_006209-T1CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
OS493_006210-T1CASPASE
OS493_006211-T1
OS493_006212-T1
OS493_006213-T1DYNAMIN
OS493_006214-T1DYNAMIN
OS493_006215-T1DYNAMIN
OS493_006216-T1
OS493_006217-T1
OS493_006218-T1DYNAMIN
OS493_006219-T1WD40 REPEAT PROTEIN
OS493_006220-T1OVOCHYMASE-RELATED
OS493_006221-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
OS493_006222-T1CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
OS493_006223-T1DEATH DOMAIN-CONTAINING PROTEIN CRADD
OS493_006224-T1NEURALIZED
OS493_006225-T1NEURALIZED
OS493_006226-T1NEURALIZED
OS493_006227-T1NEURALIZED
OS493_006228-T1
OS493_006229-T1SEGMENT POLARITY PROTEIN DISHEVELLED
OS493_006230-T1SEGMENT POLARITY PROTEIN DISHEVELLED
OS493_006231-T1
OS493_006232-T1GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA
OS493_006233-T1ENOLASE
OS493_006234-T1RNA RECOGNITION MOTIF-CONTAINING
OS493_006235-T1RNA RECOGNITION MOTIF-CONTAINING
OS493_006236-T1MYELOID LEUKEMIA FACTOR
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