About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_005912-T1BCL-2 RELATED
OS493_005913-T160 KDA RIBONUCLEOPROTEIN SSA/RO
OS493_005914-T1
OS493_005915-T1TYROSINE-PROTEIN KINASE
OS493_005916-T1KINETOCHORE-ASSOCIATED PROTEIN DSN1 HOMOLOG
OS493_005917-T1QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE
OS493_005918-T1
OS493_005919-T1FUKUTIN RELATED PROTEIN
OS493_005920-T1FUKUTIN RELATED PROTEIN
OS493_005921-T1LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 3
OS493_005922-T1SIMILAR TO RIKEN CDNA 1700025G04 GENE
OS493_005923-T1
OS493_005924-T1SLR5058 PROTEIN
OS493_005925-T1
OS493_005926-T1
OS493_005927-T1SCHLAFEN
OS493_005928-T1WD40 REPEAT PROTEIN
OS493_005929-T1STRESS RESPONSE PROTEIN NST1-RELATED
OS493_005930-T1UNCHARACTERIZED
OS493_005931-T1
OS493_005932-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_005933-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_005934-T1
OS493_005935-T1
OS493_005936-T1
OS493_005937-T1PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
OS493_005938-T1QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2
OS493_005940-T1
OS493_005941-T1BAT2 HLA-B-ASSOCIATED TRANSCRIPT 2
OS493_005942-T1BAT2 HLA-B-ASSOCIATED TRANSCRIPT 2
OS493_005943-T1MONOCARBOXYLATE TRANSPORTER
OS493_005944-T1PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
OS493_005945-T1PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
OS493_005946-T1
OS493_005947-T1UNCHARACTERIZED
OS493_005948-T1UNCHARACTERIZED
OS493_005949-T1UNCHARACTERIZED
OS493_005950-T1UNCHARACTERIZED
OS493_005951-T1UNCHARACTERIZED
OS493_005952-T1SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B
OS493_005953-T1
OS493_005954-T1
OS493_005956-T1
OS493_005957-T1GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1
OS493_005958-T1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
OS493_005959-T1SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS
OS493_005960-T1SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS
OS493_005961-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_005962-T1ANKYRIN REPEAT PROTEIN
OS493_005963-T1
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