Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_005912-T1 | BCL-2 RELATED |
OS493_005913-T1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
OS493_005914-T1 | |
OS493_005915-T1 | TYROSINE-PROTEIN KINASE |
OS493_005916-T1 | KINETOCHORE-ASSOCIATED PROTEIN DSN1 HOMOLOG |
OS493_005917-T1 | QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE |
OS493_005918-T1 | |
OS493_005919-T1 | FUKUTIN RELATED PROTEIN |
OS493_005920-T1 | FUKUTIN RELATED PROTEIN |
OS493_005921-T1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 3 |
OS493_005922-T1 | SIMILAR TO RIKEN CDNA 1700025G04 GENE |
OS493_005923-T1 | |
OS493_005924-T1 | SLR5058 PROTEIN |
OS493_005925-T1 | |
OS493_005926-T1 | |
OS493_005927-T1 | SCHLAFEN |
OS493_005928-T1 | WD40 REPEAT PROTEIN |
OS493_005929-T1 | STRESS RESPONSE PROTEIN NST1-RELATED |
OS493_005930-T1 | UNCHARACTERIZED |
OS493_005931-T1 | |
OS493_005932-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_005933-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_005934-T1 | |
OS493_005935-T1 | |
OS493_005936-T1 | |
OS493_005937-T1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
OS493_005938-T1 | QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2 |
OS493_005940-T1 | |
OS493_005941-T1 | BAT2 HLA-B-ASSOCIATED TRANSCRIPT 2 |
OS493_005942-T1 | BAT2 HLA-B-ASSOCIATED TRANSCRIPT 2 |
OS493_005943-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_005944-T1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
OS493_005945-T1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
OS493_005946-T1 | |
OS493_005947-T1 | UNCHARACTERIZED |
OS493_005948-T1 | UNCHARACTERIZED |
OS493_005949-T1 | UNCHARACTERIZED |
OS493_005950-T1 | UNCHARACTERIZED |
OS493_005951-T1 | UNCHARACTERIZED |
OS493_005952-T1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B |
OS493_005953-T1 | |
OS493_005954-T1 | |
OS493_005956-T1 | |
OS493_005957-T1 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1 |
OS493_005958-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
OS493_005959-T1 | SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS |
OS493_005960-T1 | SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS |
OS493_005961-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_005962-T1 | ANKYRIN REPEAT PROTEIN |
OS493_005963-T1 |