Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_005861-T1 | MYOMEGALIN |
OS493_005862-T1 | |
OS493_005863-T1 | MYOMEGALIN |
OS493_005864-T1 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 2 |
OS493_005865-T1 | |
OS493_005866-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
OS493_005867-T1 | UNCHARACTERIZED |
OS493_005868-T1 | |
OS493_005869-T1 | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED |
OS493_005870-T1 | CYTOKINE RECEPTOR |
OS493_005871-T1 | TNFR-CYS DOMAIN-CONTAINING PROTEIN |
OS493_005872-T1 | TUMOR NECROSIS FACTOR RECEPTOR |
OS493_005873-T1 | TUMOR NECROSIS FACTOR RECEPTOR |
OS493_005874-T1 | HMG DOMAIN-CONTAINING PROTEIN 3 |
OS493_005875-T1 | |
OS493_005876-T1 | |
OS493_005877-T1 | |
OS493_005878-T1 | TUMOR NECROSIS FACTOR RECEPTOR |
OS493_005879-T1 | CALCIUM HOMEOSTASIS MODULATOR PROTEIN |
OS493_005880-T1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN |
OS493_005881-T1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN |
OS493_005882-T1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
OS493_005883-T1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
OS493_005884-T1 | PIKACHURIN-LIKE PROTEIN |
OS493_005885-T1 | |
OS493_005886-T1 | FI19480P1 |
OS493_005887-T1 | SPERMATID WD-REPEAT PROTEIN |
OS493_005888-T1 | UPF0696 PROTEIN C11ORF68 |
OS493_005889-T1 | |
OS493_005890-T1 | DELTA-AMINOLEVULINIC ACID DEHYDRATASE |
OS493_005891-T1 | UBIQUITIN-LIKE PROTEIN 5 |
OS493_005892-T1 | |
OS493_005893-T1 | |
OS493_005894-T1 | SLR5058 PROTEIN |
OS493_005895-T1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
OS493_005896-T1 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 2 |
OS493_005897-T1 | UNCHARACTERIZED |
OS493_005898-T1 | |
OS493_005899-T1 | |
OS493_005900-T1 | |
OS493_005901-T1 | |
OS493_005902-T1 | SLR5058 PROTEIN |
OS493_005903-T1 | UNCHARACTERIZED |
OS493_005904-T1 | UNCHARACTERIZED |
OS493_005905-T1 | |
OS493_005906-T1 | |
OS493_005907-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_005909-T1 | |
OS493_005910-T1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
OS493_005911-T1 |