Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_005544-T1 | PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN |
OS493_005545-T1 | PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN |
OS493_005546-T1 | |
OS493_005547-T1 | DNAJ DOMAIN CONTAINING PROTEIN, EXPRESSED |
OS493_005548-T1 | SYNAPTOTAGMIN 14, ISOFORM D |
OS493_005549-T1 | DUF445 DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_005550-T1 | |
OS493_005551-T1 | - |
OS493_005552-T1 | - |
OS493_005554-T1 | |
OS493_005555-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_005556-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_005557-T1 | TMEM26 PROTEIN |
OS493_005558-T1 | |
OS493_005559-T1 | |
OS493_005560-T1 | POLYCOMB GROUP PROTEIN |
OS493_005561-T1 | |
OS493_005562-T1 | TUBULIN POLYGLUTAMYLASE |
OS493_005563-T1 | TUBULIN POLYGLUTAMYLASE |
OS493_005564-T1 | |
OS493_005565-T1 | |
OS493_005566-T1 | SETA BINDING PROTEIN 1 |
OS493_005567-T1 | SETA BINDING PROTEIN 1 |
OS493_005568-T1 | |
OS493_005569-T1 | SETA BINDING PROTEIN 1 |
OS493_005570-T1 | - |
OS493_005571-T1 | - |
OS493_005572-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
OS493_005573-T1 | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER |
OS493_005574-T1 | |
OS493_005575-T1 | |
OS493_005576-T1 | |
OS493_005577-T1 | |
OS493_005578-T1 | CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT DELTA-RELATED |
OS493_005579-T1 | TUBULIN--TYROSINE LIGASE |
OS493_005580-T1 | COFILIN-RELATED |
OS493_005581-T1 | RIBOSOME BINDING PROTEIN-1 |
OS493_005582-T1 | RIBOSOME BINDING PROTEIN-1 |
OS493_005583-T1 | ANNEXIN |
OS493_005584-T1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
OS493_005585-T1 | FUKUTIN RELATED PROTEIN |
OS493_005586-T1 | FUKUTIN RELATED PROTEIN |
OS493_005587-T1 | ABC1 FAMILY PROTEIN |
OS493_005588-T1 | SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2 |
OS493_005589-T1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_005590-T1 | SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2 |
OS493_005591-T1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_005592-T1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_005593-T1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_005594-T1 | UNCHARACTERIZED |