About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_005544-T1PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN
OS493_005545-T1PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN
OS493_005546-T1
OS493_005547-T1DNAJ DOMAIN CONTAINING PROTEIN, EXPRESSED
OS493_005548-T1SYNAPTOTAGMIN 14, ISOFORM D
OS493_005549-T1DUF445 DOMAIN-CONTAINING PROTEIN-RELATED
OS493_005550-T1
OS493_005551-T1-
OS493_005552-T1-
OS493_005554-T1
OS493_005555-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_005556-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_005557-T1TMEM26 PROTEIN
OS493_005558-T1
OS493_005559-T1
OS493_005560-T1POLYCOMB GROUP PROTEIN
OS493_005561-T1
OS493_005562-T1TUBULIN POLYGLUTAMYLASE
OS493_005563-T1TUBULIN POLYGLUTAMYLASE
OS493_005564-T1
OS493_005565-T1
OS493_005566-T1SETA BINDING PROTEIN 1
OS493_005567-T1SETA BINDING PROTEIN 1
OS493_005568-T1
OS493_005569-T1SETA BINDING PROTEIN 1
OS493_005570-T1-
OS493_005571-T1-
OS493_005572-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
OS493_005573-T1FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER
OS493_005574-T1
OS493_005575-T1
OS493_005576-T1
OS493_005577-T1
OS493_005578-T1CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT DELTA-RELATED
OS493_005579-T1TUBULIN--TYROSINE LIGASE
OS493_005580-T1COFILIN-RELATED
OS493_005581-T1RIBOSOME BINDING PROTEIN-1
OS493_005582-T1RIBOSOME BINDING PROTEIN-1
OS493_005583-T1ANNEXIN
OS493_005584-T1HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
OS493_005585-T1FUKUTIN RELATED PROTEIN
OS493_005586-T1FUKUTIN RELATED PROTEIN
OS493_005587-T1ABC1 FAMILY PROTEIN
OS493_005588-T1SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2
OS493_005589-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
OS493_005590-T1SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2
OS493_005591-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
OS493_005592-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
OS493_005593-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
OS493_005594-T1UNCHARACTERIZED
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