About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002179-T1URIDINE PHOSPHORYLASE
OS493_002180-T1BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
OS493_002181-T1LASP
OS493_002182-T1PROTEIN NCBP2AS2
OS493_002183-T1ANKYRIN REPEAT PROTEIN
OS493_002184-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
OS493_002185-T1HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT
OS493_002186-T1ZINC FINGER PROTEIN 200
OS493_002187-T1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
OS493_002189-T1HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED
OS493_002190-T1CHIMERIN FAMILY MEMBER
OS493_002191-T1F-BOX ONLY PROTEIN 4
OS493_002192-T1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
OS493_002193-T1-
OS493_002195-T1CHIMERIN FAMILY MEMBER
OS493_002196-T1CHIMERIN FAMILY MEMBER
OS493_002197-T1-
OS493_002199-T1-
OS493_002200-T1CHIMERIN FAMILY MEMBER
OS493_002201-T1-
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