Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_005174-T1 | |
OS493_005175-T1 | |
OS493_005176-T1 | |
OS493_005177-T1 | |
OS493_005178-T1 | PROPERDIN |
OS493_005179-T1 | SECRETED MODULAR CALCIUM-BINDING PROTEIN |
OS493_005180-T1 | KREMEN PROTEIN |
OS493_005181-T1 | TRANSCRIPTION FACTOR MAF |
OS493_005182-T1 | TRANSCRIPTION FACTOR MAF |
OS493_005183-T1 | TRANSCRIPTION FACTOR MAF |
OS493_005184-T1 | TRANSCRIPTION FACTOR MAF |
OS493_005185-T1 | |
OS493_005186-T1 | TRANSCRIPTION FACTOR MAF |
OS493_005187-T1 | U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A |
OS493_005188-T1 | ACTIVATING TRANSCRIPTION FACTOR 7 INTERACTING PROTEIN |
OS493_005189-T1 | |
OS493_005190-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
OS493_005191-T1 | CYTOCHROME P450 FAMILY 4 |
OS493_005192-T1 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
OS493_005193-T1 | TRANSMEMBRANE PROTEIN 151 HOMOLOG |
OS493_005195-T1 | |
OS493_005196-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_005197-T1 | |
OS493_005198-T1 | |
OS493_005199-T1 | |
OS493_005200-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_005201-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_005202-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_005203-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_005204-T1 | UNCHARACTERIZED |
OS493_005205-T1 | |
OS493_005206-T1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
OS493_005207-T1 | SOLUTE CARRIER FAMILY 52 |
OS493_005208-T1 | NACHT DOMAIN-CONTAINING PROTEIN |
OS493_005209-T1 | |
OS493_005210-T1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
OS493_005211-T1 | |
OS493_005212-T1 | |
OS493_005213-T1 | |
OS493_005214-T1 | |
OS493_005215-T1 | UPF0183 PROTEIN |
OS493_005216-T1 | RAB11-BINDING PROTEIN RELCH |
OS493_005217-T1 | RAB11-BINDING PROTEIN RELCH |
OS493_005218-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_005219-T1 | |
OS493_005220-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_005221-T1 | |
OS493_005222-T1 | |
OS493_005223-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_005224-T1 | G PROTEIN-COUPLED RECEPTOR |