About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_005174-T1
OS493_005175-T1
OS493_005176-T1
OS493_005177-T1
OS493_005178-T1PROPERDIN
OS493_005179-T1SECRETED MODULAR CALCIUM-BINDING PROTEIN
OS493_005180-T1KREMEN PROTEIN
OS493_005181-T1TRANSCRIPTION FACTOR MAF
OS493_005182-T1TRANSCRIPTION FACTOR MAF
OS493_005183-T1TRANSCRIPTION FACTOR MAF
OS493_005184-T1TRANSCRIPTION FACTOR MAF
OS493_005185-T1
OS493_005186-T1TRANSCRIPTION FACTOR MAF
OS493_005187-T1U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A
OS493_005188-T1ACTIVATING TRANSCRIPTION FACTOR 7 INTERACTING PROTEIN
OS493_005189-T1
OS493_005190-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
OS493_005191-T1CYTOCHROME P450 FAMILY 4
OS493_005192-T1B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
OS493_005193-T1TRANSMEMBRANE PROTEIN 151 HOMOLOG
OS493_005195-T1
OS493_005196-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_005197-T1
OS493_005198-T1
OS493_005199-T1
OS493_005200-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_005201-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_005202-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_005203-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_005204-T1UNCHARACTERIZED
OS493_005205-T1
OS493_005206-T1DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE
OS493_005207-T1SOLUTE CARRIER FAMILY 52
OS493_005208-T1NACHT DOMAIN-CONTAINING PROTEIN
OS493_005209-T1
OS493_005210-T1RAN GTPASE-ACTIVATING PROTEIN 1
OS493_005211-T1
OS493_005212-T1
OS493_005213-T1
OS493_005214-T1
OS493_005215-T1UPF0183 PROTEIN
OS493_005216-T1RAB11-BINDING PROTEIN RELCH
OS493_005217-T1RAB11-BINDING PROTEIN RELCH
OS493_005218-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_005219-T1
OS493_005220-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_005221-T1
OS493_005222-T1
OS493_005223-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_005224-T1G PROTEIN-COUPLED RECEPTOR
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