Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_005121-T1 | |
OS493_005123-T1 | |
OS493_005124-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_005125-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_005126-T1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE 19 |
OS493_005127-T1 | UNCHARACTERIZED |
OS493_005128-T1 | SERINE/THREONINE-PROTEIN KINASE IAL-RELATED |
OS493_005129-T1 | ARYLSULFATASE FAMILY MEMBER |
OS493_005130-T1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 |
OS493_005131-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H |
OS493_005132-T1 | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER |
OS493_005133-T1 | NEURALIZED |
OS493_005134-T1 | - |
OS493_005135-T1 | - |
OS493_005136-T1 | GMP REDUCTASE |
OS493_005137-T1 | ATAXIN 1 |
OS493_005138-T1 | FANCONI ANEMIA GROUP A PROTEIN |
OS493_005139-T1 | FANCONI ANEMIA GROUP A PROTEIN |
OS493_005140-T1 | |
OS493_005141-T1 | |
OS493_005142-T1 | NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNIT |
OS493_005143-T1 | |
OS493_005144-T1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 48 |
OS493_005145-T1 | |
OS493_005146-T1 | - |
OS493_005147-T1 | NEFA-INTERACTING NUCLEAR PROTEIN NIP30 |
OS493_005148-T1 | |
OS493_005149-T1 | PERFORIN-LIKE PROTEIN 1 |
OS493_005150-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_005151-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
OS493_005152-T1 | UNCHARACTERIZED |
OS493_005153-T1 | |
OS493_005154-T1 | |
OS493_005155-T1 | |
OS493_005156-T1 | ACTIN BUNDLING/MISSING IN METASTASIS-RELATED |
OS493_005157-T1 | UDP-GLUCOSE 4-EPIMERASE |
OS493_005158-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_005159-T1 | DOCKING PROTEIN RELATED |
OS493_005160-T1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
OS493_005163-T1 | |
OS493_005164-T1 | |
OS493_005165-T1 | |
OS493_005166-T1 | |
OS493_005167-T1 | |
OS493_005168-T1 | |
OS493_005169-T1 | |
OS493_005170-T1 | |
OS493_005171-T1 | |
OS493_005172-T1 | ENDO-1,4-BETA-GLUCANASE |
OS493_005173-T1 | ENDO-1,4-BETA-GLUCANASE |