About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004809-T1
OS493_004810-T1ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
OS493_004811-T1NUCLEAR FACTOR-RELATED
OS493_004812-T1
OS493_004813-T1-
OS493_004814-T1
OS493_004815-T1
OS493_004816-T1NACHT DOMAIN-CONTAINING PROTEIN
OS493_004817-T1
OS493_004818-T1
OS493_004819-T1LEUCOKININ RECEPTOR-RELATED
OS493_004820-T1
OS493_004821-T1SULFOTRANSFERASE SULT
OS493_004822-T1
OS493_004823-T1SULFOTRANSFERASE SULT
OS493_004824-T1
OS493_004825-T1
OS493_004826-T1WD REPEAT-CONTAINING PROTEIN POP1
OS493_004827-T1G-PROTEIN COUPLED RECEPTOR
OS493_004828-T1UNCHARACTERIZED
OS493_004829-T1DEOXYNUCLEOSIDE KINASE
OS493_004830-T1DEOXYNUCLEOSIDE KINASE
OS493_004831-T1UNCHARACTERIZED
OS493_004832-T1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM21
OS493_004834-T1
OS493_004835-T1
OS493_004836-T1
OS493_004837-T1
OS493_004838-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_004839-T1
OS493_004840-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_004841-T1
OS493_004842-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_004843-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_004844-T1
OS493_004845-T1ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
OS493_004846-T1
OS493_004847-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_004848-T1
OS493_004849-T1
OS493_004850-T1
OS493_004851-T1
OS493_004852-T1
OS493_004853-T1
OS493_004854-T1RAS-RELATED PROTEIN RAB
OS493_004855-T1
OS493_004856-T1
OS493_004857-T1UNCHARACTERIZED
OS493_004858-T1
OS493_004859-T1UNCHARACTERIZED
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