About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_001914-T1KELCH DOMAIN-CONTAINING PROTEIN
OS493_001915-T1KELCH DOMAIN-CONTAINING PROTEIN
OS493_001916-T1TANDEM PH DOMAIN CONTAINING PROTEIN
OS493_001917-T14-NITROPHENYLPHOSPHATASE-RELATED
OS493_001918-T1PHOSPHATIDYLINOSITOL SYNTHASE
OS493_001919-T1PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT
OS493_001920-T1PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
OS493_001921-T1AMINOTRANSFERASE CLASS III
OS493_001922-T1SIDEROFLEXIN
OS493_001926-T14-HYDROXYPHENYLPYRUVATE DIOXYGENASE
OS493_001927-T1-
OS493_001928-T1STIMULATOR OF INTERFERON GENES PROTEIN
OS493_001930-T1SI:CH211-108C17.2-RELATED-RELATED
OS493_001931-T1-
OS493_001932-T1STIMULATOR OF INTERFERON GENES PROTEIN
OS493_001933-T1STIMULATOR OF INTERFERON GENES PROTEIN
OS493_001934-T1ACYLPYRUVASE
OS493_001935-T1O-METHYLTRANSFERASE-RELATED
OS493_001936-T1ACYLPYRUVASE
OS493_001937-T1-
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