About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004603-T1UNCHARACTERIZED
OS493_004604-T1CAMP-BINDING PROTEIN 1-RELATED
OS493_004605-T1
OS493_004606-T1UNCHARACTERIZED
OS493_004607-T1UNCHARACTERIZED
OS493_004608-T1
OS493_004609-T1EPHRIN
OS493_004610-T1EPHRIN
OS493_004611-T1BYSTIN
OS493_004612-T1
OS493_004613-T1
OS493_004614-T1SECRETED MODULAR CALCIUM-BINDING PROTEIN
OS493_004615-T1FOLLISTATIN-RELATED
OS493_004616-T1ACP24A4-RELATED
OS493_004617-T1GLUTATHIONE PEROXIDASE
OS493_004618-T1L-THREONINE 3-DEHYDROGENASE
OS493_004619-T1L-THREONINE 3-DEHYDROGENASE
OS493_004620-T1
OS493_004622-T1EPHRIN
OS493_004623-T1XANTHINE DEHYDROGENASE
OS493_004624-T1AMSH-LIKE PROTEASE
OS493_004625-T1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
OS493_004626-T1-
OS493_004627-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_004628-T1FARNESYLCYSTEINE LYASE
OS493_004629-T1FARNESYLCYSTEINE LYASE
OS493_004630-T1
OS493_004631-T1
OS493_004632-T1
OS493_004633-T1
OS493_004634-T1XANTHINE DEHYDROGENASE
OS493_004635-T1XANTHINE DEHYDROGENASE
OS493_004636-T1XANTHINE DEHYDROGENASE
OS493_004637-T1FOLLISTATIN-RELATED
OS493_004638-T1
OS493_004639-T1
OS493_004640-T1GREB1-RELATED
OS493_004641-T1
OS493_004642-T1
OS493_004643-T1
OS493_004644-T1
OS493_004645-T1
OS493_004646-T1
OS493_004647-T1
OS493_004648-T1
OS493_004649-T1GREB1-RELATED
OS493_004650-T1
OS493_004651-T1GREB1-RELATED
OS493_004652-T1GREB1-RELATED
OS493_004653-T1
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