Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_004387-T1 | |
OS493_004388-T1 | |
OS493_004389-T1 | NFATC2-INTERACTING PROTEIN |
OS493_004390-T1 | MITOGEN-ACTIVATED PROTEIN KINASE |
OS493_004391-T1 | MITOGEN-ACTIVATED PROTEIN KINASE |
OS493_004392-T1 | |
OS493_004393-T1 | |
OS493_004394-T1 | TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED |
OS493_004395-T1 | E3 UBIQUITIN-PROTEIN LIGASE HECTD4-RELATED |
OS493_004396-T1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
OS493_004397-T1 | E3 UBIQUITIN-PROTEIN LIGASE HECTD4-RELATED |
OS493_004398-T1 | |
OS493_004399-T1 | |
OS493_004400-T1 | E3 UBIQUITIN-PROTEIN LIGASE HECTD4-RELATED |
OS493_004401-T1 | E3 UBIQUITIN-PROTEIN LIGASE HECTD4-RELATED |
OS493_004402-T1 | ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 1 |
OS493_004404-T1 | ISOCITRATE LYASE/MALATE SYNTHASE |
OS493_004405-T1 | MAX DIMERIZATION, MAD |
OS493_004406-T1 | TRANSMEMBRANE PROTEIN 248-LIKE |
OS493_004407-T1 | AGAP007109-PA |
OS493_004408-T1 | |
OS493_004409-T1 | ARMADILLO-TYPE FOLD-RELATED |
OS493_004410-T1 | ARMADILLO-TYPE FOLD-RELATED |
OS493_004411-T1 | ARMADILLO-TYPE FOLD-RELATED |
OS493_004412-T1 | ARMADILLO-TYPE FOLD-RELATED |
OS493_004413-T1 | VESICLE PROTEIN SORTING-ASSOCIATED |
OS493_004414-T1 | TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR |
OS493_004415-T1 | TRICHOPLEIN KERATIN FILAMENT-BINDING PROTEIN FAMILY MEMBER |
OS493_004417-T1 | TETRASPANIN |
OS493_004419-T1 | LIM DOMAIN KINASE 1 |
OS493_004420-T1 | OPSIN |
OS493_004421-T1 | |
OS493_004422-T1 | |
OS493_004423-T1 | MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED |
OS493_004424-T1 | SEPTIN |
OS493_004425-T1 | SEPTIN |
OS493_004426-T1 | |
OS493_004427-T1 | |
OS493_004428-T1 | ISOCITRATE LYASE/MALATE SYNTHASE |
OS493_004429-T1 | |
OS493_004430-T1 | TRANSGELIN |
OS493_004431-T1 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
OS493_004432-T1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
OS493_004433-T1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO |
OS493_004434-T1 | |
OS493_004435-T1 | |
OS493_004436-T1 | |
OS493_004437-T1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
OS493_004439-T1 | UNCHARACTERIZED |
OS493_004440-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |