About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004162-T1GEO07735P1-RELATED-RELATED
OS493_004163-T1
OS493_004164-T1TEKTIN
OS493_004165-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_004166-T1SERINE/THREONINE-PROTEIN KINASE
OS493_004167-T1-
OS493_004169-T1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10
OS493_004170-T1
OS493_004171-T1
OS493_004172-T1
OS493_004173-T1BETA-GLUCURONIDASE
OS493_004174-T1BETA-GLUCURONIDASE
OS493_004175-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13
OS493_004176-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13
OS493_004177-T1DIMETHYLANILINE MONOOXYGENASE
OS493_004178-T1
OS493_004179-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_004180-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_004181-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_004182-T1SI:CH211-196P9.1-RELATED
OS493_004183-T1NITRIC OXIDE SYNTHASE OXYGENASE
OS493_004184-T1NITRIC OXIDE SYNTHASE OXYGENASE
OS493_004185-T1NITRIC OXIDE SYNTHASE OXYGENASE
OS493_004186-T1
OS493_004188-T1
OS493_004190-T1NITRIC OXIDE SYNTHASE OXYGENASE
OS493_004191-T1NITRIC OXIDE SYNTHASE OXYGENASE
OS493_004192-T1NITRIC OXIDE SYNTHASE OXYGENASE
OS493_004193-T1NITRIC OXIDE SYNTHASE OXYGENASE
OS493_004196-T1
OS493_004197-T1RAN BINDING PROTEIN
OS493_004198-T1
OS493_004199-T1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5
OS493_004200-T1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5
OS493_004201-T1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5
OS493_004202-T1
OS493_004203-T1DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
OS493_004204-T1DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
OS493_004205-T1
OS493_004206-T1
OS493_004207-T1
OS493_004208-T1
OS493_004209-T1
OS493_004210-T1DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
OS493_004211-T1
OS493_004212-T1P2X PURINOCEPTOR
OS493_004213-T1MALARIA ANTIGEN-RELATED
OS493_004214-T1P2X PURINOCEPTOR
OS493_004215-T1P2X PURINOCEPTOR
OS493_004216-T1PHOSPHATIDYLINOSITOL TRANSFER PROTEIN
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