About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_003955-T1
OS493_003956-T1WAT1-RELATED PROTEIN
OS493_003957-T1WAT1-RELATED PROTEIN
OS493_003958-T1CADHERIN DOMAIN-CONTAINING PROTEIN
OS493_003960-T1
OS493_003961-T1
OS493_003962-T1
OS493_003963-T1
OS493_003964-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_003965-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_003966-T1
OS493_003967-T1CUE DOMAIN CONTAINING PROTEIN 1
OS493_003968-T1CUE DOMAIN CONTAINING PROTEIN 1
OS493_003969-T1MULTICOPPER OXIDASE-RELATED
OS493_003970-T1
OS493_003971-T1DENSITY-REGULATED PROTEIN HOMOLOG
OS493_003972-T1FUKUTIN RELATED PROTEIN
OS493_003973-T1
OS493_003974-T1
OS493_003975-T1
OS493_003976-T1
OS493_003977-T1
OS493_003978-T1
OS493_003979-T1
OS493_003980-T1ZINC FINGER PROTEIN
OS493_003981-T1ZINC FINGER AND SCAN DOMAIN-CONTAINING
OS493_003982-T1L-THREONINE 3-DEHYDROGENASE
OS493_003983-T1L-THREONINE 3-DEHYDROGENASE
OS493_003984-T1
OS493_003985-T1PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1
OS493_003986-T12,5-DIKETO-D-GLUCONIC ACID REDUCTASE
OS493_003987-T1NGD5/OSM-6/IFT52
OS493_003988-T1NGD5/OSM-6/IFT52
OS493_003989-T1
OS493_003990-T1FER-1-LIKE
OS493_003991-T1
OS493_003992-T1COLON CANCER-ASSOCIATED PROTEIN MIC1
OS493_003993-T1COLON CANCER-ASSOCIATED PROTEIN MIC1
OS493_003994-T1LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
OS493_003995-T1UNCHARACTERIZED
OS493_003996-T1
OS493_003997-T1UNCHARACTERIZED
OS493_003998-T1
OS493_003999-T1NUCLEAR PORE COMPLEX PROTEIN NUP
OS493_004000-T1
OS493_004001-T1
OS493_004002-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H
OS493_004003-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31
OS493_004005-T1CHROMOSOME 1, WHOLE GENOME SHOTGUN SEQUENCE
OS493_004006-T1RIBOSOME MATURATION PROTEIN SBDS
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