About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_003795-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_003796-T1PROTEIN NATD1
OS493_003797-T1LD44762P
OS493_003798-T1RAS-RELATED PROTEIN RAB
OS493_003799-T1CHROMOSOME 16 OPEN READING FRAME 96
OS493_003800-T1GLUTAMINE-RICH PROTEIN 2
OS493_003801-T1
OS493_003802-T1GOOD FOR FULL DBP5 ACTIVITY PROTEIN 2
OS493_003803-T1GOOD FOR FULL DBP5 ACTIVITY PROTEIN 2
OS493_003804-T1GOOD FOR FULL DBP5 ACTIVITY PROTEIN 2
OS493_003805-T1METALLOPROTEASE TLDD
OS493_003806-T1YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1
OS493_003807-T1
OS493_003808-T1CD59 GLYCOPROTEIN
OS493_003809-T1
OS493_003810-T1CD59 GLYCOPROTEIN
OS493_003811-T1CD59 GLYCOPROTEIN
OS493_003812-T1CD59 GLYCOPROTEIN
OS493_003813-T1SOLUTE CARRIER FAMILY 25 MEMBER 44
OS493_003814-T1
OS493_003815-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_003816-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_003817-T1SOLUTE CARRIER FAMILY 25 MEMBER 44
OS493_003818-T1SOLUTE CARRIER FAMILY 25 MEMBER 44
OS493_003819-T1GH01354P
OS493_003820-T1
OS493_003821-T1
OS493_003822-T1MULTICOPPER OXIDASE-RELATED
OS493_003823-T1ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER
OS493_003825-T1WD-40 REPEAT PROTEIN
OS493_003826-T1WD-40 REPEAT PROTEIN
OS493_003827-T1
OS493_003828-T1
OS493_003829-T1
OS493_003830-T1
OS493_003831-T1
OS493_003832-T1OPSIN
OS493_003833-T1G PROTEIN-COUPLED RECEPTOR
OS493_003834-T1G PROTEIN-COUPLED RECEPTOR
OS493_003835-T1
OS493_003836-T1
OS493_003837-T1
OS493_003838-T1PROSTAGLANDIN G/H SYNTHASE
OS493_003839-T1PROSTAGLANDIN G/H SYNTHASE
OS493_003840-T1PROSTAGLANDIN G/H SYNTHASE
OS493_003841-T1PROSTAGLANDIN G/H SYNTHASE
OS493_003842-T1UBX-RELATED
OS493_003843-T1UNCHARACTERIZED
OS493_003844-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_003845-T1
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