Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_003795-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
OS493_003796-T1 | PROTEIN NATD1 |
OS493_003797-T1 | LD44762P |
OS493_003798-T1 | RAS-RELATED PROTEIN RAB |
OS493_003799-T1 | CHROMOSOME 16 OPEN READING FRAME 96 |
OS493_003800-T1 | GLUTAMINE-RICH PROTEIN 2 |
OS493_003801-T1 | |
OS493_003802-T1 | GOOD FOR FULL DBP5 ACTIVITY PROTEIN 2 |
OS493_003803-T1 | GOOD FOR FULL DBP5 ACTIVITY PROTEIN 2 |
OS493_003804-T1 | GOOD FOR FULL DBP5 ACTIVITY PROTEIN 2 |
OS493_003805-T1 | METALLOPROTEASE TLDD |
OS493_003806-T1 | YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1 |
OS493_003807-T1 | |
OS493_003808-T1 | CD59 GLYCOPROTEIN |
OS493_003809-T1 | |
OS493_003810-T1 | CD59 GLYCOPROTEIN |
OS493_003811-T1 | CD59 GLYCOPROTEIN |
OS493_003812-T1 | CD59 GLYCOPROTEIN |
OS493_003813-T1 | SOLUTE CARRIER FAMILY 25 MEMBER 44 |
OS493_003814-T1 | |
OS493_003815-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_003816-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_003817-T1 | SOLUTE CARRIER FAMILY 25 MEMBER 44 |
OS493_003818-T1 | SOLUTE CARRIER FAMILY 25 MEMBER 44 |
OS493_003819-T1 | GH01354P |
OS493_003820-T1 | |
OS493_003821-T1 | |
OS493_003822-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_003823-T1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
OS493_003825-T1 | WD-40 REPEAT PROTEIN |
OS493_003826-T1 | WD-40 REPEAT PROTEIN |
OS493_003827-T1 | |
OS493_003828-T1 | |
OS493_003829-T1 | |
OS493_003830-T1 | |
OS493_003831-T1 | |
OS493_003832-T1 | OPSIN |
OS493_003833-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_003834-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_003835-T1 | |
OS493_003836-T1 | |
OS493_003837-T1 | |
OS493_003838-T1 | PROSTAGLANDIN G/H SYNTHASE |
OS493_003839-T1 | PROSTAGLANDIN G/H SYNTHASE |
OS493_003840-T1 | PROSTAGLANDIN G/H SYNTHASE |
OS493_003841-T1 | PROSTAGLANDIN G/H SYNTHASE |
OS493_003842-T1 | UBX-RELATED |
OS493_003843-T1 | UNCHARACTERIZED |
OS493_003844-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
OS493_003845-T1 |