About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_003637-T1PEROXISOMAL BIOGENESIS FACTOR 11
OS493_003639-T1DIHYDROFOLATE REDUCTASE
OS493_003640-T1CARNITINE O-ACYLTRANSFERASE
OS493_003641-T1GUANIDINOACETATE N-METHYLTRANSFERASE
OS493_003642-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_003643-T1DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE
OS493_003644-T1
OS493_003645-T1COLORECTAL MUTANT CANCER PROTEIN MCC PROTEIN -RELATED
OS493_003646-T1
OS493_003647-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_003648-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_003649-T1AN1-TYPE ZINC FINGER PROTEIN
OS493_003650-T1EXPRESSED PROTEIN
OS493_003651-T1
OS493_003652-T1
OS493_003653-T1
OS493_003654-T1
OS493_003655-T1
OS493_003656-T1HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
OS493_003657-T1ANTIBIOTIC RESISTANCE PROTEIN MCBG
OS493_003658-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_003659-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_003660-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_003661-T1
OS493_003662-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_003663-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_003664-T1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71
OS493_003665-T1METHANETHIOL OXIDASE
OS493_003666-T1
OS493_003667-T1METHANETHIOL OXIDASE
OS493_003668-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR
OS493_003669-T1
OS493_003670-T1
OS493_003671-T1
OS493_003672-T1HIGH MOBILITY GROUP PROTEIN 2
OS493_003673-T1SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11
OS493_003674-T1
OS493_003675-T1CCHC-TYPE DOMAIN-CONTAINING PROTEIN
OS493_003676-T1
OS493_003678-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_003679-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_003680-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_003681-T1SIN3B-RELATED
OS493_003682-T1
OS493_003683-T1
OS493_003684-T1
OS493_003685-T1
OS493_003686-T1PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE
OS493_003688-T1FI02073P
OS493_003689-T1PROTEIN SIDEKICK
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