Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_003637-T1 | PEROXISOMAL BIOGENESIS FACTOR 11 |
OS493_003639-T1 | DIHYDROFOLATE REDUCTASE |
OS493_003640-T1 | CARNITINE O-ACYLTRANSFERASE |
OS493_003641-T1 | GUANIDINOACETATE N-METHYLTRANSFERASE |
OS493_003642-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_003643-T1 | DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE |
OS493_003644-T1 | |
OS493_003645-T1 | COLORECTAL MUTANT CANCER PROTEIN MCC PROTEIN -RELATED |
OS493_003646-T1 | |
OS493_003647-T1 | PROTEASE M1 ZINC METALLOPROTEASE |
OS493_003648-T1 | PROTEASE M1 ZINC METALLOPROTEASE |
OS493_003649-T1 | AN1-TYPE ZINC FINGER PROTEIN |
OS493_003650-T1 | EXPRESSED PROTEIN |
OS493_003651-T1 | |
OS493_003652-T1 | |
OS493_003653-T1 | |
OS493_003654-T1 | |
OS493_003655-T1 | |
OS493_003656-T1 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
OS493_003657-T1 | ANTIBIOTIC RESISTANCE PROTEIN MCBG |
OS493_003658-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_003659-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_003660-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_003661-T1 | |
OS493_003662-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_003663-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_003664-T1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71 |
OS493_003665-T1 | METHANETHIOL OXIDASE |
OS493_003666-T1 | |
OS493_003667-T1 | METHANETHIOL OXIDASE |
OS493_003668-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR |
OS493_003669-T1 | |
OS493_003670-T1 | |
OS493_003671-T1 | |
OS493_003672-T1 | HIGH MOBILITY GROUP PROTEIN 2 |
OS493_003673-T1 | SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11 |
OS493_003674-T1 | |
OS493_003675-T1 | CCHC-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_003676-T1 | |
OS493_003678-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_003679-T1 | PROTEASE M1 ZINC METALLOPROTEASE |
OS493_003680-T1 | PROTEASE M1 ZINC METALLOPROTEASE |
OS493_003681-T1 | SIN3B-RELATED |
OS493_003682-T1 | |
OS493_003683-T1 | |
OS493_003684-T1 | |
OS493_003685-T1 | |
OS493_003686-T1 | PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE |
OS493_003688-T1 | FI02073P |
OS493_003689-T1 | PROTEIN SIDEKICK |