Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_003586-T1 | |
OS493_003587-T1 | SYNPHILIN-1 |
OS493_003588-T1 | |
OS493_003589-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_003590-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_003591-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_003592-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_003593-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
OS493_003594-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
OS493_003595-T1 | |
OS493_003596-T1 | BNIP - RELATED |
OS493_003597-T1 | BNIP - RELATED |
OS493_003598-T1 | LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN |
OS493_003599-T1 | ALPHA-MANNOSIDASE |
OS493_003600-T1 | CALICYLIN BINDING PROTEIN |
OS493_003601-T1 | |
OS493_003602-T1 | BNIP - RELATED |
OS493_003603-T1 | |
OS493_003604-T1 | |
OS493_003605-T1 | ALPHA-GLUCOSIDASE |
OS493_003606-T1 | |
OS493_003607-T1 | |
OS493_003608-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
OS493_003609-T1 | |
OS493_003610-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
OS493_003611-T1 | |
OS493_003612-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
OS493_003613-T1 | UNCHARACTERIZED |
OS493_003614-T1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B |
OS493_003615-T1 | MEIOSIS-SPECIFIC NUCLEAR STRUCTURAL PROTEIN 1 |
OS493_003616-T1 | KREMEN PROTEIN |
OS493_003617-T1 | |
OS493_003618-T1 | |
OS493_003619-T1 | PROTEIN ARGININE N-METHYLTRANSFERASE |
OS493_003620-T1 | ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2 |
OS493_003621-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_003622-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_003623-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_003624-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_003625-T1 | |
OS493_003626-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_003627-T1 | |
OS493_003628-T1 | GLYCOPROTEIN HORMONE RECEPTOR |
OS493_003629-T1 | |
OS493_003630-T1 | GLYCOPROTEIN HORMONE RECEPTOR |
OS493_003631-T1 | |
OS493_003632-T1 | GLYCOPROTEIN HORMONE RECEPTOR |
OS493_003633-T1 | DIHYDROFOLATE REDUCTASE |
OS493_003635-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
OS493_003636-T1 |