About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_003586-T1
OS493_003587-T1SYNPHILIN-1
OS493_003588-T1
OS493_003589-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_003590-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_003591-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_003592-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_003593-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
OS493_003594-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
OS493_003595-T1
OS493_003596-T1BNIP - RELATED
OS493_003597-T1BNIP - RELATED
OS493_003598-T1LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN
OS493_003599-T1ALPHA-MANNOSIDASE
OS493_003600-T1CALICYLIN BINDING PROTEIN
OS493_003601-T1
OS493_003602-T1BNIP - RELATED
OS493_003603-T1
OS493_003604-T1
OS493_003605-T1ALPHA-GLUCOSIDASE
OS493_003606-T1
OS493_003607-T1
OS493_003608-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_003609-T1
OS493_003610-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_003611-T1
OS493_003612-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_003613-T1UNCHARACTERIZED
OS493_003614-T1U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B
OS493_003615-T1MEIOSIS-SPECIFIC NUCLEAR STRUCTURAL PROTEIN 1
OS493_003616-T1KREMEN PROTEIN
OS493_003617-T1
OS493_003618-T1
OS493_003619-T1PROTEIN ARGININE N-METHYLTRANSFERASE
OS493_003620-T1ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
OS493_003621-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_003622-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_003623-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_003624-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_003625-T1
OS493_003626-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_003627-T1
OS493_003628-T1GLYCOPROTEIN HORMONE RECEPTOR
OS493_003629-T1
OS493_003630-T1GLYCOPROTEIN HORMONE RECEPTOR
OS493_003631-T1
OS493_003632-T1GLYCOPROTEIN HORMONE RECEPTOR
OS493_003633-T1DIHYDROFOLATE REDUCTASE
OS493_003635-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
OS493_003636-T1
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