About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_001411-T1-
OS493_001412-T1CELL CYCLE CONTROL PROTEIN CWF22-RELATED
OS493_001413-T1-
OS493_001414-T1NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1
OS493_001415-T126 PROTEASOME COMPLEX SUBUNIT DSS1
OS493_001416-T1-
OS493_001417-T1ATP-DEPENDENT RNA HELICASE
OS493_001418-T1HOMEO BOX HB9 LIKE A-RELATED
OS493_001419-T1HOMEO BOX HB9 LIKE A-RELATED
OS493_001420-T1-
OS493_001421-T1HOMEOBOX PROTEIN NKX
OS493_001422-T1HOMEOBOX PROTEIN GBX
OS493_001423-T1FI19922P1-RELATED
OS493_001424-T1GATA ZINC FINGER DOMAIN-CONTAINING
OS493_001425-T1HOMEO BOX HB9 LIKE A-RELATED
OS493_001426-T1PROTEIN CBG18333
OS493_001427-T1PROTEIN PHOSPHATASE 2C
OS493_001428-T1G PROTEIN-COUPLED RECEPTOR
OS493_001429-T1UNCHARACTERIZED
OS493_001430-T1-
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