About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_003376-T1SCAVENGER RECEPTOR CLASS F
OS493_003377-T1
OS493_003378-T1
OS493_003379-T1
OS493_003380-T1
OS493_003381-T1LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN
OS493_003382-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
OS493_003383-T12,5-DIKETO-D-GLUCONIC ACID REDUCTASE
OS493_003384-T12,5-DIKETO-D-GLUCONIC ACID REDUCTASE
OS493_003385-T1BETA-ALANINE-ACTIVATING ENZYME
OS493_003386-T1PROTEIN QUA-1-RELATED
OS493_003387-T1
OS493_003388-T1
OS493_003389-T1
OS493_003390-T1
OS493_003391-T1
OS493_003392-T1
OS493_003393-T1
OS493_003394-T1
OS493_003395-T1
OS493_003396-T1GLYCINE AMIDINOTRANSFERASE, MITOCHONDRIAL
OS493_003397-T1
OS493_003398-T140S RIBOSOMAL PROTEIN S27
OS493_003399-T1GH03947P
OS493_003400-T1NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
OS493_003401-T1DYMECLIN
OS493_003402-T1SMAD
OS493_003403-T1DNA HELICASE RECQ FAMILY MEMBER
OS493_003404-T1
OS493_003405-T1
OS493_003406-T1
OS493_003407-T1SMAD
OS493_003408-T1UNCHARACTERIZED
OS493_003409-T1ACROSIN-RELATED
OS493_003410-T1SOLUTE CARRIER FAMILY 25
OS493_003411-T1UNCHARACTERIZED
OS493_003412-T1UNCHARACTERIZED
OS493_003413-T1
OS493_003414-T1HEAT SHOCK FACTOR 2-BINDING PROTEIN
OS493_003415-T1
OS493_003416-T1
OS493_003417-T1
OS493_003418-T1
OS493_003419-T1CD59 GLYCOPROTEIN
OS493_003420-T1
OS493_003421-T1
OS493_003422-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_003423-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_003424-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_003425-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
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