Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_003054-T1 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
OS493_003055-T1 | FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145 |
OS493_003056-T1 | FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145 |
OS493_003057-T1 | THIOPURINE S-METHYLTRANSFERASE |
OS493_003058-T1 | DERMATOPONTIN-RELATED |
OS493_003059-T1 | PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED |
OS493_003060-T1 | |
OS493_003061-T1 | |
OS493_003062-T1 | |
OS493_003063-T1 | LIPOXYGENASE |
OS493_003064-T1 | BETA-TUBULIN COFACTOR D |
OS493_003065-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_003067-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_003068-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_003069-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_003070-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_003071-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_003073-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_003076-T1 | |
OS493_003077-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_003078-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_003079-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_003080-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_003081-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_003082-T1 | CARDIOLIPIN HYDROLASE |
OS493_003083-T1 | ET TRANSLATION PRODUCT-RELATED |
OS493_003084-T1 | ET TRANSLATION PRODUCT-RELATED |
OS493_003087-T1 | BRAIN PROTEIN I3 |
OS493_003088-T1 | |
OS493_003089-T1 | |
OS493_003090-T1 | DESUMOYLATING ISOPEPTIDASE |
OS493_003092-T1 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
OS493_003093-T1 | 26S PROTESOME SUBUNIT 6 |
OS493_003094-T1 | |
OS493_003095-T1 | LIMKAIN B LKAP |
OS493_003096-T1 | |
OS493_003097-T1 | UNCHARACTERIZED |
OS493_003098-T1 | LEUCINE-, GLUTAMATE- AND LYSINE-RICH PROTEIN 1 |
OS493_003100-T1 | |
OS493_003101-T1 | |
OS493_003102-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_003103-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_003104-T1 | |
OS493_003105-T1 | DOM-3 RELATED |
OS493_003106-T1 | SRC-ASSOCIATED ADAPTOR PROTEIN |
OS493_003107-T1 | AVIDIN-RELATED |
OS493_003108-T1 | |
OS493_003109-T1 | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL |
OS493_003110-T1 | ANOCTAMIN |
OS493_003111-T1 | ANOCTAMIN |