Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_002844-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_002845-T1 | ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_002846-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_002847-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_002848-T1 | WD REPEAT-CONTAINING PROTEIN POP1 |
OS493_002849-T1 | SMALL MEMBRANE PROTEIN-RELATED |
OS493_002850-T1 | METALLOPROTEASE TLDD |
OS493_002851-T1 | |
OS493_002852-T1 | EG:EG0003.4 PROTEIN-RELATED |
OS493_002853-T1 | EG:EG0003.4 PROTEIN-RELATED |
OS493_002854-T1 | ANKYRIN DOMAIN-CONTAINING |
OS493_002855-T1 | ENOS INTERACTING PROTEIN |
OS493_002856-T1 | ENOYL-COA HYDRATASE-RELATED |
OS493_002857-T1 | GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN |
OS493_002858-T1 | GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN |
OS493_002859-T1 | RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATED |
OS493_002860-T1 | |
OS493_002861-T1 | |
OS493_002862-T1 | GUANYLYL CYCLASE |
OS493_002863-T1 | GUANYLYL CYCLASE |
OS493_002864-T1 | GUANYLYL CYCLASE |
OS493_002865-T1 | GUANYLYL CYCLASE |
OS493_002866-T1 | GUANYLYL CYCLASE |
OS493_002868-T1 | FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE |
OS493_002869-T1 | XPA-BINDING PROTEIN 1-RELATED |
OS493_002870-T1 | |
OS493_002871-T1 | |
OS493_002872-T1 | IQ DOMAIN-CONTAINING PROTEIN D |
OS493_002873-T1 | INWARD RECTIFIER POTASSIUM CHANNEL |
OS493_002874-T1 | INWARD RECTIFIER POTASSIUM CHANNEL |
OS493_002875-T1 | INWARD RECTIFIER POTASSIUM CHANNEL |
OS493_002876-T1 | INWARD RECTIFIER POTASSIUM CHANNEL |
OS493_002877-T1 | UNCHARACTERIZED |
OS493_002878-T1 | SOX100B |
OS493_002879-T1 | N-ALPHA-ACETYLTRANSFERASE 60 |
OS493_002880-T1 | POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED |
OS493_002881-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 57 |
OS493_002882-T1 | |
OS493_002883-T1 | NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1 |
OS493_002884-T1 | LEUCINE CARBOXYL METHYLTRANSFERASE |
OS493_002885-T1 | |
OS493_002886-T1 | GUANYLYL CYCLASE |
OS493_002887-T1 | NATRIURETIC PEPTIDE RECEPTOR 3-RELATED |
OS493_002889-T1 | GUANYLYL CYCLASE |
OS493_002890-T1 | NATRIURETIC PEPTIDE RECEPTOR 3-RELATED |
OS493_002891-T1 | |
OS493_002892-T1 | GUANYLYL CYCLASE |
OS493_002893-T1 | NETRIN/LAMININ-RELATED |
OS493_002895-T1 | SYNTAXIN |
OS493_002896-T1 |