About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002517-T1
OS493_002518-T1SHC TRANSFORMING PROTEIN
OS493_002519-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_002520-T1BATTENIN
OS493_002521-T1BATTENIN
OS493_002522-T1BATTENIN
OS493_002523-T1GLUCOSE REPRESSIBLE PROTEIN MAK10
OS493_002524-T1SERINE INCORPORATOR
OS493_002525-T1HVA22-LIKE PROTEINS
OS493_002526-T1TB1 PROTEIN-RELATED
OS493_002527-T1ATP-DEPENDENT RNA HELICASE DBP3
OS493_002528-T1
OS493_002531-T1
OS493_002532-T1
OS493_002533-T1
OS493_002534-T1T CELL-SPECIFIC ADAPTER PROTEIN TSAD
OS493_002535-T1MYOSIN
OS493_002536-T1AGAP011099-PA
OS493_002537-T1AGAP011099-PA
OS493_002538-T1ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN
OS493_002539-T1SPECKLE-TYPE POZ PROTEIN
OS493_002540-T1
OS493_002541-T1INTEGRATOR COMPLEX SUBUNIT 3
OS493_002542-T1
OS493_002543-T1VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE
OS493_002544-T1ENDOSULFINE
OS493_002545-T1GLYCOSYLATED LYSOSOMAL MEMBRANE PROTEIN
OS493_002546-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
OS493_002547-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
OS493_002548-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
OS493_002549-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
OS493_002550-T1BILE ACID BETA-GLUCOSIDASE-RELATED
OS493_002551-T1NUDIX HYDROLASE
OS493_002552-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
OS493_002553-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
OS493_002554-T1ALPHA- AND GAMMA-ADAPTIN-BINDING PROTEIN P34
OS493_002555-T1IQ DOMAIN-CONTAINING PROTEIN H
OS493_002556-T1IQ DOMAIN-CONTAINING PROTEIN H
OS493_002557-T1IQ DOMAIN-CONTAINING PROTEIN H
OS493_002558-T1GLYCOPROTEIN HORMONE RECEPTOR
OS493_002559-T1CUBILIN-LIKE PROTEIN
OS493_002560-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_002561-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_002562-T1GUANYLYL CYCLASE
OS493_002563-T1GUANYLYL CYCLASE
OS493_002564-T1RAS GTPASE-ACTIVATING PROTEINS
OS493_002565-T1LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR
OS493_002566-T1RAS GTPASE-ACTIVATING PROTEINS
OS493_002567-T1RAS GTPASE-ACTIVATING PROTEINS
OS493_002568-T1UNCHARACTERIZED
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