Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_002464-T1 | |
OS493_002465-T1 | PROTEIN SIDEKICK |
OS493_002466-T1 | |
OS493_002467-T1 | FUKUTIN RELATED PROTEIN |
OS493_002469-T1 | FRIZZLED |
OS493_002470-T1 | OVOCHYMASE-RELATED |
OS493_002471-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 87 |
OS493_002472-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 87 |
OS493_002473-T1 | LD44032P |
OS493_002474-T1 | LD44032P |
OS493_002475-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_002476-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_002477-T1 | HOMEOBOX PROTEIN HHEX |
OS493_002478-T1 | THIOREDOXIN |
OS493_002479-T1 | F13M7.16 PROTEIN |
OS493_002480-T1 | |
OS493_002481-T1 | |
OS493_002482-T1 | PROTEIN CBG23806 |
OS493_002483-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_002484-T1 | STABILIZER OF AXONEMAL MICROTUBULES 2 |
OS493_002485-T1 | |
OS493_002486-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
OS493_002487-T1 | HISTIDINE-RICH GLYCOPROTEIN |
OS493_002488-T1 | BASIGIN RELATED |
OS493_002489-T1 | BASIGIN RELATED |
OS493_002490-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_002491-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_002493-T1 | CONTACTIN 5 |
OS493_002494-T1 | CONTACTIN 5 |
OS493_002495-T1 | PROTEIN CBG20567 |
OS493_002496-T1 | |
OS493_002497-T1 | |
OS493_002498-T1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
OS493_002499-T1 | ZINC FINGER PROTEIN |
OS493_002500-T1 | METHYLTRANSFERASE |
OS493_002501-T1 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
OS493_002502-T1 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
OS493_002503-T1 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
OS493_002504-T1 | |
OS493_002506-T1 | TETRASPANIN |
OS493_002507-T1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
OS493_002508-T1 | TRANSMEMBRANE GTPASE FZO1 |
OS493_002509-T1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
OS493_002510-T1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
OS493_002511-T1 | TETRASPANIN |
OS493_002512-T1 | |
OS493_002513-T1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
OS493_002514-T1 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
OS493_002515-T1 | LON PROTEASE |
OS493_002516-T1 | LON PROTEASE |