About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002464-T1
OS493_002465-T1PROTEIN SIDEKICK
OS493_002466-T1
OS493_002467-T1FUKUTIN RELATED PROTEIN
OS493_002469-T1FRIZZLED
OS493_002470-T1OVOCHYMASE-RELATED
OS493_002471-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 87
OS493_002472-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 87
OS493_002473-T1LD44032P
OS493_002474-T1LD44032P
OS493_002475-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_002476-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_002477-T1HOMEOBOX PROTEIN HHEX
OS493_002478-T1THIOREDOXIN
OS493_002479-T1F13M7.16 PROTEIN
OS493_002480-T1
OS493_002481-T1
OS493_002482-T1PROTEIN CBG23806
OS493_002483-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
OS493_002484-T1STABILIZER OF AXONEMAL MICROTUBULES 2
OS493_002485-T1
OS493_002486-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
OS493_002487-T1HISTIDINE-RICH GLYCOPROTEIN
OS493_002488-T1BASIGIN RELATED
OS493_002489-T1BASIGIN RELATED
OS493_002490-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_002491-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_002493-T1CONTACTIN 5
OS493_002494-T1CONTACTIN 5
OS493_002495-T1PROTEIN CBG20567
OS493_002496-T1
OS493_002497-T1
OS493_002498-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
OS493_002499-T1ZINC FINGER PROTEIN
OS493_002500-T1METHYLTRANSFERASE
OS493_002501-T1FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
OS493_002502-T1FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
OS493_002503-T1GM2 GANGLIOSIDE ACTIVATOR PROTEIN
OS493_002504-T1
OS493_002506-T1TETRASPANIN
OS493_002507-T1DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
OS493_002508-T1TRANSMEMBRANE GTPASE FZO1
OS493_002509-T1DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
OS493_002510-T1DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
OS493_002511-T1TETRASPANIN
OS493_002512-T1
OS493_002513-T1PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1
OS493_002514-T1RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
OS493_002515-T1LON PROTEASE
OS493_002516-T1LON PROTEASE
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