About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002190-T1CHIMERIN FAMILY MEMBER
OS493_002191-T1F-BOX ONLY PROTEIN 4
OS493_002192-T1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
OS493_002193-T1
OS493_002195-T1CHIMERIN FAMILY MEMBER
OS493_002196-T1CHIMERIN FAMILY MEMBER
OS493_002197-T1
OS493_002199-T1
OS493_002200-T1CHIMERIN FAMILY MEMBER
OS493_002201-T1
OS493_002202-T1
OS493_002203-T1
OS493_002204-T1-
OS493_002205-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_002206-T1CHONDROLECTIN VARIANT CHODLFDELTAE.
OS493_002209-T1T-BOX PROTEIN-RELATED
OS493_002210-T1UNCHARACTERIZED
OS493_002211-T1
OS493_002212-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_002214-T1FIBRILLIN-RELATED
OS493_002215-T1FIBRILLIN-RELATED
OS493_002216-T1FIBRILLIN-RELATED
OS493_002218-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_002219-T1
OS493_002222-T1EXPRESSED PROTEIN
OS493_002223-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
OS493_002224-T1
OS493_002225-T1FIBRILLIN-RELATED
OS493_002226-T1
OS493_002227-T1MULTICOPPER OXIDASE-RELATED
OS493_002228-T1SUSHI DOMAIN-CONTAINING PROTEIN
OS493_002229-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_002230-T1PROTEIN CBR-CLEC-78
OS493_002231-T1FOLLICULIN FAMILY MEMBER
OS493_002232-T1PEPTIDYL-TRNA HYDROLASE
OS493_002233-T1UNCHARACTERIZED
OS493_002234-T1SULFOTRANSFERASE SULT
OS493_002235-T1
OS493_002236-T1
OS493_002237-T1HELICASE WITH DEATH DOMAIN-RELATED
OS493_002238-T1HELICASE WITH DEATH DOMAIN-RELATED
OS493_002239-T1TRANSMEMBRANE GTPASE FZO1
OS493_002241-T1TRYPSIN-RELATED
OS493_002242-T1SUSHI DOMAIN-CONTAINING PROTEIN
OS493_002243-T1DENN DOMAIN-CONTAINING
OS493_002244-T1DENN DOMAIN-CONTAINING
OS493_002245-T1
OS493_002246-T1
OS493_002247-T1
OS493_002248-T1
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