About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_001863-T1
OS493_001864-T1
OS493_001865-T1
OS493_001866-T1
OS493_001867-T1
OS493_001868-T1
OS493_001869-T1
OS493_001870-T1
OS493_001871-T1
OS493_001872-T1CHROMOBOX PROTEIN
OS493_001873-T1
OS493_001874-T1
OS493_001875-T1
OS493_001876-T1
OS493_001877-T1
OS493_001878-T1
OS493_001879-T1
OS493_001880-T1
OS493_001881-T1
OS493_001882-T1
OS493_001883-T1
OS493_001884-T1
OS493_001885-T1
OS493_001886-T1SH3-BINDING
OS493_001887-T1SH3-BINDING
OS493_001888-T1SH3-BINDING
OS493_001889-T1SH3-BINDING
OS493_001890-T1
OS493_001891-T1SH3-BINDING
OS493_001892-T1GRANULIN
OS493_001893-T1
OS493_001894-T1KINESIN-RELATED
OS493_001895-T1CENTROSOMAL PROTEIN 2
OS493_001896-T1
OS493_001897-T1C-TYPE LECTIN DOMAIN FAMILY 9 MEMBER A
OS493_001898-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_001899-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_001900-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_001901-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_001902-T1PROTEIN SIDEKICK
OS493_001903-T1CYTOKINE RECEPTOR
OS493_001904-T1
OS493_001905-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_001906-T1DIMETHYLANILINE MONOOXYGENASE
OS493_001907-T1MACPF DOMAIN-CONTAINING PROTEIN
OS493_001908-T1MACPF DOMAIN-CONTAINING PROTEIN
OS493_001909-T1MACPF DOMAIN-CONTAINING PROTEIN
OS493_001910-T1
OS493_001912-T1
OS493_001913-T1KINESIN-LIKE PROTEIN KIF11
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