Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_001754-T1 | SYNAPTOSOMAL ASSOCIATED PROTEIN |
OS493_001755-T1 | GAMETOGENETIN-BINDING PROTEIN 2 |
OS493_001756-T1 | |
OS493_001757-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
OS493_001758-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
OS493_001759-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
OS493_001760-T1 | |
OS493_001762-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
OS493_001763-T1 | |
OS493_001764-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
OS493_001765-T1 | |
OS493_001766-T1 | |
OS493_001768-T1 | TUDOR DOMAIN CONTAINING PROTEIN |
OS493_001769-T1 | |
OS493_001770-T1 | MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED |
OS493_001771-T1 | NUCLEOREDOXIN |
OS493_001772-T1 | |
OS493_001773-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_001774-T1 | |
OS493_001775-T1 | |
OS493_001776-T1 | |
OS493_001777-T1 | |
OS493_001778-T1 | MONOACYLGLYCEROL LIPASE |
OS493_001779-T1 | HISTONE H1 |
OS493_001780-T1 | |
OS493_001781-T1 | |
OS493_001782-T1 | - |
OS493_001784-T1 | MYELIN TRANSCRIPTION FACTOR 1-RELATED |
OS493_001785-T1 | SLR5058 PROTEIN |
OS493_001786-T1 | |
OS493_001787-T1 | NACHT, LRR AND CARD DOMAINS-CONTAINING |
OS493_001788-T1 | |
OS493_001789-T1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
OS493_001790-T1 | NACHT, LRR AND CARD DOMAINS-CONTAINING |
OS493_001791-T1 | MYELIN TRANSCRIPTION FACTOR 1-RELATED |
OS493_001792-T1 | |
OS493_001793-T1 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
OS493_001794-T1 | D-ALANYL-D-ALANINE CARBOXYPEPTIDASE |
OS493_001795-T1 | CALCIUM BINDING PROTEINS |
OS493_001796-T1 | CALCIUM BINDING PROTEINS |
OS493_001797-T1 | CALCIUM BINDING PROTEINS |
OS493_001798-T1 | MRNA EXPORT FACTOR AND BUB3 |
OS493_001799-T1 | |
OS493_001800-T1 | TRANSMEMBRANE PROTEIN 14, 15 |
OS493_001801-T1 | PROTEIN FAM91A1 |
OS493_001802-T1 | |
OS493_001803-T1 | |
OS493_001804-T1 | |
OS493_001805-T1 | MITOGEN-ACTIVATED PROTEIN KINASE |
OS493_001806-T1 |