About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_000592-T1OPSIN
OS493_000593-T1DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT
OS493_000594-T1FORKHEAD BOX PROTEIN J2 FAMILY MEMBER
OS493_000596-T1ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED
OS493_000597-T1SHIELDIN COMPLEX SUBUNIT 3
OS493_000598-T1TTC17 PROTEIN
OS493_000599-T1UNCHARACTERIZED
OS493_000600-T1PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5
OS493_000601-T1-
OS493_000602-T1-
OS493_000603-T1-
OS493_000604-T1-
OS493_000605-T1-
OS493_000606-T1CALCIUM BINDING PROTEIN
OS493_000607-T1COLLAGEN ALPHA
OS493_000608-T1LEUCOKININ RECEPTOR-RELATED
OS493_000609-T1E3 UBIQUITIN-PROTEIN LIGASE KCMF1
OS493_000610-T1-
OS493_000611-T1CCHC-TYPE DOMAIN-CONTAINING PROTEIN
OS493_000612-T1-
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