About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_001477-T1ANTHRAX TOXIN RECEPTOR
OS493_001478-T1
OS493_001479-T1ANTHRAX TOXIN RECEPTOR
OS493_001480-T1
OS493_001481-T1
OS493_001482-T1MULTICOPPER OXIDASE-RELATED
OS493_001483-T1CONTACTIN 5
OS493_001484-T1EXPRESSED PROTEIN
OS493_001485-T1
OS493_001486-T1
OS493_001488-T1TRIHELIX TRANSCRIPTION FACTOR ASIL2
OS493_001489-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
OS493_001490-T1
OS493_001495-T1PHOX (PX) DOMAIN-CONTAINING PROTEIN
OS493_001496-T1
OS493_001497-T1MYND-TYPE DOMAIN-CONTAINING PROTEIN
OS493_001498-T1
OS493_001499-T1MYOSIN VII, XV
OS493_001500-T1MYOSIN VII, XV
OS493_001501-T1
OS493_001502-T1
OS493_001504-T1
OS493_001505-T1CONTACTIN 5
OS493_001506-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_001507-T1
OS493_001509-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_001510-T1NEPHRIN
OS493_001511-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_001512-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_001513-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_001514-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_001515-T1
OS493_001516-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_001517-T1CONTACTIN 5
OS493_001518-T1
OS493_001519-T1
OS493_001520-T1
OS493_001521-T1
OS493_001522-T1
OS493_001523-T1
OS493_001524-T1
OS493_001525-T1
OS493_001526-T1EXPRESSED PROTEIN
OS493_001527-T1WD REPEAT-CONTAINING PROTEIN POP1
OS493_001528-T1
OS493_001529-T1SHORT CHAIN DEHYDROGENASE
OS493_001530-T1CONTACTIN 5
OS493_001531-T1
OS493_001532-T1
OS493_001533-T1ATP-BINDING CASSETTE SUB-FAMILY C
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