About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_001154-T1SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER
OS493_001155-T1LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR
OS493_001156-T1ZINC FINGER AND SCAN DOMAIN-CONTAINING
OS493_001157-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
OS493_001158-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
OS493_001159-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
OS493_001161-T1RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
OS493_001162-T1
OS493_001163-T1
OS493_001164-T1
OS493_001165-T1
OS493_001166-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_001167-T1
OS493_001168-T1
OS493_001169-T1
OS493_001170-T1ZINC FINGER PROTEIN
OS493_001172-T1
OS493_001173-T1
OS493_001174-T1
OS493_001175-T1
OS493_001176-T1
OS493_001177-T1TECTONIC FAMILY MEMBER
OS493_001178-T1TECTONIC FAMILY MEMBER
OS493_001179-T1
OS493_001180-T1
OS493_001181-T1
OS493_001182-T1
OS493_001183-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
OS493_001184-T1
OS493_001185-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_001186-T1
OS493_001187-T1DIHYDROOROTASE-RELATED
OS493_001188-T1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM10
OS493_001189-T1
OS493_001190-T1N-TERMINAL ACETYLTRANSFERASE-RELATED
OS493_001191-T1N-TERMINAL ACETYLTRANSFERASE-RELATED
OS493_001192-T1N-TERMINAL ACETYLTRANSFERASE-RELATED
OS493_001193-T1
OS493_001194-T1
OS493_001195-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_001196-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_001197-T1SERINE/THREONINE PROTEIN PHOSPHATASE
OS493_001198-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_001199-T1SERINE/THREONINE PROTEIN PHOSPHATASE
OS493_001200-T1
OS493_001201-T1MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED
OS493_001202-T1C2 DOMAIN-CONTAINING PROTEIN 5
OS493_001203-T1CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR
OS493_001205-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
OS493_001206-T1GUANINE NUCLEOTIDE EXCHANGE FACTOR
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