Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_001154-T1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
OS493_001155-T1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
OS493_001156-T1 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
OS493_001157-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 |
OS493_001158-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 |
OS493_001159-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 |
OS493_001161-T1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
OS493_001162-T1 | |
OS493_001163-T1 | |
OS493_001164-T1 | |
OS493_001165-T1 | |
OS493_001166-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_001167-T1 | |
OS493_001168-T1 | |
OS493_001169-T1 | |
OS493_001170-T1 | ZINC FINGER PROTEIN |
OS493_001172-T1 | |
OS493_001173-T1 | |
OS493_001174-T1 | |
OS493_001175-T1 | |
OS493_001176-T1 | |
OS493_001177-T1 | TECTONIC FAMILY MEMBER |
OS493_001178-T1 | TECTONIC FAMILY MEMBER |
OS493_001179-T1 | |
OS493_001180-T1 | |
OS493_001181-T1 | |
OS493_001182-T1 | |
OS493_001183-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
OS493_001184-T1 | |
OS493_001185-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_001186-T1 | |
OS493_001187-T1 | DIHYDROOROTASE-RELATED |
OS493_001188-T1 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM10 |
OS493_001189-T1 | |
OS493_001190-T1 | N-TERMINAL ACETYLTRANSFERASE-RELATED |
OS493_001191-T1 | N-TERMINAL ACETYLTRANSFERASE-RELATED |
OS493_001192-T1 | N-TERMINAL ACETYLTRANSFERASE-RELATED |
OS493_001193-T1 | |
OS493_001194-T1 | |
OS493_001195-T1 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
OS493_001196-T1 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
OS493_001197-T1 | SERINE/THREONINE PROTEIN PHOSPHATASE |
OS493_001198-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_001199-T1 | SERINE/THREONINE PROTEIN PHOSPHATASE |
OS493_001200-T1 | |
OS493_001201-T1 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
OS493_001202-T1 | C2 DOMAIN-CONTAINING PROTEIN 5 |
OS493_001203-T1 | CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR |
OS493_001205-T1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
OS493_001206-T1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |