About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_001102-T1LEUCOKININ RECEPTOR-RELATED
OS493_001103-T1RNA-BINDING PROTEIN RELATED
OS493_001104-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
OS493_001105-T1
OS493_001106-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_001107-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_001108-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_001109-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_001110-T1ENVOPLAKIN
OS493_001111-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_001112-T1HUNTINGTIN INTERACTING PROTEIN 1
OS493_001113-T1UNCHARACTERIZED
OS493_001114-T1HUNTINGTIN INTERACTING PROTEIN 1
OS493_001115-T1TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA
OS493_001116-T1MITOCHONDRIAL FISSION PROCESS PROTEIN 1
OS493_001117-T1
OS493_001118-T1G PATCH DOMAIN CONTAINING PROTEIN 3
OS493_001119-T1MORN REPEAT-CONTAINING PROTEIN 3
OS493_001120-T1CALCIUM RELEASE-ACTIVATED CALCIUM CHANNEL PROTEIN 1
OS493_001121-T1PHD/F-BOX CONTAINING PROTEIN
OS493_001122-T1
OS493_001123-T1YALI0E18722P
OS493_001124-T1
OS493_001125-T1
OS493_001127-T1
OS493_001128-T1GLYCOGENIN SUBFAMILY MEMBER
OS493_001129-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_001130-T1
OS493_001131-T1UNCHARACTERIZED
OS493_001132-T1UNCHARACTERIZED
OS493_001133-T1UNCHARACTERIZED
OS493_001134-T1UNCHARACTERIZED
OS493_001135-T1
OS493_001136-T1UNCHARACTERIZED
OS493_001137-T1UNCHARACTERIZED
OS493_001138-T1
OS493_001139-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_001140-T1CHONDROITIN SYNTHASE
OS493_001141-T1
OS493_001142-T1INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
OS493_001143-T1
OS493_001144-T1ATP-DEPENDENT DNA HELICASE
OS493_001145-T1
OS493_001146-T1
OS493_001147-T1
OS493_001148-T1UNCHARACTERIZED
OS493_001149-T1
OS493_001150-T1
OS493_001151-T1
OS493_001152-T1
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