Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_000996-T1 | NUCLEAR HORMONE RECEPTOR |
OS493_000997-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
OS493_000999-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
OS493_001000-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
OS493_001001-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
OS493_001002-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
OS493_001003-T1 | |
OS493_001004-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
OS493_001005-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
OS493_001006-T1 | 14-3-3 PROTEIN |
OS493_001007-T1 | RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN |
OS493_001008-T1 | 14-3-3 PROTEIN |
OS493_001009-T1 | 14-3-3 PROTEIN |
OS493_001010-T1 | RNA HELICASE |
OS493_001011-T1 | 14-3-3 PROTEIN |
OS493_001012-T1 | 60S RIBOSOMAL PROTEIN L6 |
OS493_001013-T1 | COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL |
OS493_001014-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_001015-T1 | RH14732P |
OS493_001016-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_001017-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_001018-T1 | |
OS493_001019-T1 | |
OS493_001020-T1 | PR DOMAIN ZINC FINGER PROTEIN |
OS493_001023-T1 | VACUOLAR SORTING PROTEIN 53 |
OS493_001024-T1 | |
OS493_001025-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
OS493_001026-T1 | LYSOSOMAL ACID LIPASE-RELATED |
OS493_001027-T1 | LYSOSOMAL ACID LIPASE-RELATED |
OS493_001028-T1 | LYSOSOMAL ACID LIPASE-RELATED |
OS493_001029-T1 | |
OS493_001030-T1 | SIGNAL PEPTIDE PEPTIDASE |
OS493_001031-T1 | |
OS493_001032-T1 | |
OS493_001035-T1 | |
OS493_001036-T1 | |
OS493_001037-T1 | |
OS493_001038-T1 | LD33804P |
OS493_001039-T1 | |
OS493_001040-T1 | ION_TRANS DOMAIN-CONTAINING PROTEIN |
OS493_001041-T1 | |
OS493_001042-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_001043-T1 | |
OS493_001044-T1 | CYTOSOLIC CARBOXYPEPTIDASE |
OS493_001045-T1 | |
OS493_001046-T1 | |
OS493_001047-T1 | |
OS493_001048-T1 | |
OS493_001049-T1 | |
OS493_001050-T1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |