About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_000788-T1MYOTUBULARIN-RELATED
OS493_000789-T1
OS493_000790-T1FMS INTERACTING PROTEIN
OS493_000791-T1AT09986P-RELATED
OS493_000792-T1INNER KINETOCHORE SUBUNIT MAL2
OS493_000793-T1PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED
OS493_000794-T1COILED-COIL ALPHA-HELICAL ROD PROTEIN 1
OS493_000795-T1COILED-COIL ALPHA-HELICAL ROD PROTEIN 1
OS493_000796-T1
OS493_000797-T1PESCADILLO - RELATED
OS493_000798-T1MYOSIN
OS493_000799-T1
OS493_000800-T1GOS-28 SNARE- RELATED
OS493_000801-T1RING ZINC FINGER
OS493_000803-T1RING ZINC FINGER
OS493_000804-T1MCG131172, ISOFORM CRA_A
OS493_000805-T1SERINE/THREONINE-PROTEIN KINASE
OS493_000806-T1
OS493_000807-T1
OS493_000808-T1
OS493_000809-T1
OS493_000810-T1
OS493_000811-T1
OS493_000812-T1RNA-DEPENDENT RNA POLYMERASE
OS493_000813-T1RNA-DEPENDENT RNA POLYMERASE
OS493_000814-T1RNA-DEPENDENT RNA POLYMERASE
OS493_000815-T1RNA-DEPENDENT RNA POLYMERASE
OS493_000816-T1RNA-DEPENDENT RNA POLYMERASE
OS493_000817-T1RNA-DEPENDENT RNA POLYMERASE
OS493_000818-T1RNA-DEPENDENT RNA POLYMERASE
OS493_000819-T1RNA-DEPENDENT RNA POLYMERASE
OS493_000820-T1RNA-DEPENDENT RNA POLYMERASE
OS493_000821-T1
OS493_000822-T1
OS493_000823-T1
OS493_000824-T1RNA-DEPENDENT RNA POLYMERASE
OS493_000825-T1RNA-DEPENDENT RNA POLYMERASE
OS493_000826-T1
OS493_000827-T1LD33804P
OS493_000828-T1
OS493_000829-T1CENTROSOMAL PROTEIN 2
OS493_000830-T1TYROSINASE FAMILY MEMBER
OS493_000831-T1
OS493_000832-T1ENOLASE SUPERFAMILY, MANDELATE RACEMASE
OS493_000833-T1ENOLASE SUPERFAMILY, MANDELATE RACEMASE
OS493_000834-T1
OS493_000835-T1
OS493_000836-T1
OS493_000837-T1PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN
OS493_000839-T1PCNA-INTERACTING PARTNER
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