About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_000582-T1MATRIX METALLOPROTEINASE
OS493_000583-T1MATRIX METALLOPROTEINASE
OS493_000584-T1
OS493_000585-T1MATRIX METALLOPROTEINASE
OS493_000586-T1
OS493_000587-T1
OS493_000588-T1LEUCOKININ RECEPTOR-RELATED
OS493_000589-T1LEUCOKININ RECEPTOR-RELATED
OS493_000590-T1LEUCOKININ RECEPTOR-RELATED
OS493_000591-T1LEUCOKININ RECEPTOR-RELATED
OS493_000592-T1OPSIN
OS493_000593-T1DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT
OS493_000594-T1FORKHEAD BOX PROTEIN J2 FAMILY MEMBER
OS493_000596-T1ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED
OS493_000597-T1SHIELDIN COMPLEX SUBUNIT 3
OS493_000598-T1TTC17 PROTEIN
OS493_000599-T1UNCHARACTERIZED
OS493_000600-T1PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5
OS493_000601-T1
OS493_000602-T1
OS493_000603-T1
OS493_000604-T1
OS493_000605-T1
OS493_000606-T1CALCIUM BINDING PROTEIN
OS493_000607-T1COLLAGEN ALPHA
OS493_000608-T1LEUCOKININ RECEPTOR-RELATED
OS493_000609-T1E3 UBIQUITIN-PROTEIN LIGASE KCMF1
OS493_000610-T1
OS493_000611-T1CCHC-TYPE DOMAIN-CONTAINING PROTEIN
OS493_000612-T1
OS493_000613-T1TETRATRICOPEPTIDE REPEAT PROTEIN 1
OS493_000614-T1
OS493_000615-T1
OS493_000616-T1
OS493_000617-T1MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED
OS493_000618-T1TUMOR NECROSIS FACTOR FAMILY MEMBER
OS493_000619-T1AP COMPLEX SUBUNIT MU
OS493_000620-T1NEPHROCYSTIN-4
OS493_000621-T1MONOCARBOXYLATE TRANSPORTER
OS493_000622-T1PROTEIN G1-LIKE2
OS493_000623-T1
OS493_000624-T1
OS493_000625-T1
OS493_000626-T1LOC100145250 PROTEIN
OS493_000627-T1
OS493_000628-T1
OS493_000629-T1
OS493_000630-T1
OS493_000631-T1
OS493_000632-T1
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