Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_000582-T1 | MATRIX METALLOPROTEINASE |
OS493_000583-T1 | MATRIX METALLOPROTEINASE |
OS493_000584-T1 | |
OS493_000585-T1 | MATRIX METALLOPROTEINASE |
OS493_000586-T1 | |
OS493_000587-T1 | |
OS493_000588-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_000589-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_000590-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_000591-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_000592-T1 | OPSIN |
OS493_000593-T1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT |
OS493_000594-T1 | FORKHEAD BOX PROTEIN J2 FAMILY MEMBER |
OS493_000596-T1 | ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED |
OS493_000597-T1 | SHIELDIN COMPLEX SUBUNIT 3 |
OS493_000598-T1 | TTC17 PROTEIN |
OS493_000599-T1 | UNCHARACTERIZED |
OS493_000600-T1 | PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 |
OS493_000601-T1 | |
OS493_000602-T1 | |
OS493_000603-T1 | |
OS493_000604-T1 | |
OS493_000605-T1 | |
OS493_000606-T1 | CALCIUM BINDING PROTEIN |
OS493_000607-T1 | COLLAGEN ALPHA |
OS493_000608-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_000609-T1 | E3 UBIQUITIN-PROTEIN LIGASE KCMF1 |
OS493_000610-T1 | |
OS493_000611-T1 | CCHC-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_000612-T1 | |
OS493_000613-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 1 |
OS493_000614-T1 | |
OS493_000615-T1 | |
OS493_000616-T1 | |
OS493_000617-T1 | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED |
OS493_000618-T1 | TUMOR NECROSIS FACTOR FAMILY MEMBER |
OS493_000619-T1 | AP COMPLEX SUBUNIT MU |
OS493_000620-T1 | NEPHROCYSTIN-4 |
OS493_000621-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_000622-T1 | PROTEIN G1-LIKE2 |
OS493_000623-T1 | |
OS493_000624-T1 | |
OS493_000625-T1 | |
OS493_000626-T1 | LOC100145250 PROTEIN |
OS493_000627-T1 | |
OS493_000628-T1 | |
OS493_000629-T1 | |
OS493_000630-T1 | |
OS493_000631-T1 | |
OS493_000632-T1 |