About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_000259-T1
OS493_000260-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
OS493_000262-T1
OS493_000263-T1
OS493_000264-T1
OS493_000265-T1GLYCOPROTEIN HORMONE RECEPTOR
OS493_000266-T1UNCHARACTERIZED
OS493_000267-T1GLYCINE-, GLUTAMATE-, THIENYLCYCLOHEXYLPIPERIDINE-BINDING PROTEIN
OS493_000268-T1GLYCINE-, GLUTAMATE-, THIENYLCYCLOHEXYLPIPERIDINE-BINDING PROTEIN
OS493_000269-T1
OS493_000270-T1
OS493_000271-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_000272-T1
OS493_000273-T1
OS493_000274-T1CHYMOTRYPSIN-RELATED
OS493_000275-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_000276-T1
OS493_000277-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_000278-T1
OS493_000279-T1
OS493_000280-T1
OS493_000281-T1
OS493_000282-T1NUCLEOPORIN NUP188 HOMOLOG
OS493_000283-T1RHAMNOSYL O-METHYLTRANSFERASE
OS493_000284-T1OTU DOMAIN CONTAINING PROTEIN
OS493_000285-T1I-KAPPA-B-LIKE PROTEIN IKBL
OS493_000286-T1
OS493_000287-T1
OS493_000288-T1TUMOR PROTEIN P63-REGULATED GENE 1-LIKE PROTEIN
OS493_000289-T1FORKHEAD BOX PROTEIN
OS493_000290-T1COATOMER
OS493_000291-T1COATOMER
OS493_000292-T1
OS493_000294-T1
OS493_000295-T1
OS493_000296-T1
OS493_000297-T1
OS493_000298-T1
OS493_000300-T1
OS493_000301-T1NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER
OS493_000303-T11,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE
OS493_000304-T11,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE
OS493_000305-T1-
OS493_000306-T1CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER
OS493_000307-T1GLYCOLIPID TRANSFER PROTEIN-RELATED
OS493_000308-T1ETS
OS493_000309-T1
OS493_000310-T11,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE
OS493_000311-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_000312-T1VOLTAGE-GATED POTASSIUM CHANNEL
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