Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_000154-T1 | SPERMINE SYNTHASE |
OS493_000155-T1 | |
OS493_000156-T1 | UNCHARACTERIZED |
OS493_000157-T1 | |
OS493_000158-T1 | SH3 DOMAIN-CONTAINING |
OS493_000160-T1 | COLLAGEN ALPHA |
OS493_000161-T1 | FLAVIN MONOAMINE OXIDASE |
OS493_000162-T1 | |
OS493_000163-T1 | EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE |
OS493_000164-T1 | |
OS493_000165-T1 | SMITH-MAGENIS SYNDROME REGION GENE 8 PROTEIN |
OS493_000166-T1 | CASPASE 8 ASSOCIATED PROTEIN 2 |
OS493_000167-T1 | LD21662P |
OS493_000168-T1 | UNCHARACTERIZED |
OS493_000169-T1 | |
OS493_000170-T1 | |
OS493_000172-T1 | - |
OS493_000173-T1 | INTELECTIN |
OS493_000174-T1 | ARGININE-TRNA-PROTEIN TRANSFERASE 1 |
OS493_000175-T1 | |
OS493_000176-T1 | |
OS493_000177-T1 | |
OS493_000178-T1 | HOMOGENTISATE 1,2-DIOXYGENASE |
OS493_000179-T1 | TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN TAB |
OS493_000180-T1 | IRE1-RELATED |
OS493_000181-T1 | |
OS493_000182-T1 | |
OS493_000183-T1 | |
OS493_000185-T1 | CUBILIN-LIKE PROTEIN |
OS493_000186-T1 | FERRITIN |
OS493_000187-T1 | |
OS493_000188-T1 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
OS493_000189-T1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
OS493_000190-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_000192-T1 | |
OS493_000193-T1 | FLAVIN MONOAMINE OXIDASE |
OS493_000194-T1 | FLAVIN MONOAMINE OXIDASE |
OS493_000195-T1 | FLAVIN MONOAMINE OXIDASE |
OS493_000196-T1 | CULLIN |
OS493_000197-T1 | CULLIN |
OS493_000198-T1 | CULLIN |
OS493_000199-T1 | |
OS493_000200-T1 | PROTEIN PITCHFORK |
OS493_000201-T1 | SERINE/THREONINE-PROTEIN KINASE |
OS493_000202-T1 | UPF0240 PROTEIN |
OS493_000203-T1 | - |
OS493_000204-T1 | UNCHARACTERIZED |
OS493_000205-T1 | NUCLEOPORIN NUP43 |
OS493_000206-T1 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11 |
OS493_000207-T1 |