About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_000469-T1
OS493_000470-T1ACETYL-COA C-ACETYLTRANSFERASE
OS493_000471-T1CATION-TRANSPORTING ATPASE-RELATED
OS493_000472-T1CATION-TRANSPORTING ATPASE-RELATED
OS493_000473-T1PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2
OS493_000474-T1OXYSTEROL-BINDING PROTEIN-RELATED
OS493_000475-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_000476-T1
OS493_000477-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_000478-T1
OS493_000479-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_000481-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_000482-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_000483-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_000484-T1
OS493_000485-T1
OS493_000486-T1E3 UBIQUITIN-PROTEIN LIGASE TRAIP
OS493_000487-T1
OS493_000488-T1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
OS493_000489-T1
OS493_000490-T1TMEM26 PROTEIN
OS493_000491-T1NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING
OS493_000492-T1
OS493_000493-T1LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED
OS493_000494-T1
OS493_000495-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_000496-T1
OS493_000497-T1
OS493_000498-T15'->3' EXORIBONUCLEASE
OS493_000499-T1XAA-PRO AMINOPEPTIDASE 1
OS493_000500-T1
OS493_000501-T1
OS493_000502-T1
OS493_000504-T1ELYS PROTEIN
OS493_000505-T1
OS493_000509-T1
OS493_000510-T1
OS493_000511-T1METHYLTRANSFERASE
OS493_000512-T1AMMONIUM TRANSPORTER
OS493_000513-T1AMMONIUM TRANSPORTER
OS493_000514-T1AMMONIUM TRANSPORTER
OS493_000515-T1
OS493_000516-T1CELL DEATH ACTIVATOR CIDE
OS493_000517-T1WNT RELATED
OS493_000518-T1COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
OS493_000519-T1OXIDASE/PEROXIDASE
OS493_000520-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_000521-T1MIX-TYPE HOMEOBOX GENE 1-RELATED
OS493_000522-T1CASPASE-ACTIVATED DNASE
OS493_000523-T1
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