Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_000469-T1 | |
OS493_000470-T1 | ACETYL-COA C-ACETYLTRANSFERASE |
OS493_000471-T1 | CATION-TRANSPORTING ATPASE-RELATED |
OS493_000472-T1 | CATION-TRANSPORTING ATPASE-RELATED |
OS493_000473-T1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2 |
OS493_000474-T1 | OXYSTEROL-BINDING PROTEIN-RELATED |
OS493_000475-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_000476-T1 | |
OS493_000477-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_000478-T1 | |
OS493_000479-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_000481-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_000482-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_000483-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_000484-T1 | |
OS493_000485-T1 | |
OS493_000486-T1 | E3 UBIQUITIN-PROTEIN LIGASE TRAIP |
OS493_000487-T1 | |
OS493_000488-T1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
OS493_000489-T1 | |
OS493_000490-T1 | TMEM26 PROTEIN |
OS493_000491-T1 | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
OS493_000492-T1 | |
OS493_000493-T1 | LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED |
OS493_000494-T1 | |
OS493_000495-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_000496-T1 | |
OS493_000497-T1 | |
OS493_000498-T1 | 5'->3' EXORIBONUCLEASE |
OS493_000499-T1 | XAA-PRO AMINOPEPTIDASE 1 |
OS493_000500-T1 | |
OS493_000501-T1 | |
OS493_000502-T1 | |
OS493_000504-T1 | ELYS PROTEIN |
OS493_000505-T1 | |
OS493_000509-T1 | |
OS493_000510-T1 | |
OS493_000511-T1 | METHYLTRANSFERASE |
OS493_000512-T1 | AMMONIUM TRANSPORTER |
OS493_000513-T1 | AMMONIUM TRANSPORTER |
OS493_000514-T1 | AMMONIUM TRANSPORTER |
OS493_000515-T1 | |
OS493_000516-T1 | CELL DEATH ACTIVATOR CIDE |
OS493_000517-T1 | WNT RELATED |
OS493_000518-T1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
OS493_000519-T1 | OXIDASE/PEROXIDASE |
OS493_000520-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_000521-T1 | MIX-TYPE HOMEOBOX GENE 1-RELATED |
OS493_000522-T1 | CASPASE-ACTIVATED DNASE |
OS493_000523-T1 |