About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_000524-T1
OS493_000526-T1
OS493_000527-T1
OS493_000528-T1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
OS493_000529-T1
OS493_000530-T1
OS493_000531-T1
OS493_000532-T1
OS493_000533-T1
OS493_000534-T1
OS493_000535-T1
OS493_000536-T1
OS493_000537-T1
OS493_000538-T1MALE STERILE (3) 76CA
OS493_000539-T1EXPRESSED PROTEIN
OS493_000540-T1
OS493_000541-T1
OS493_000542-T1
OS493_000543-T1
OS493_000544-T1
OS493_000545-T1
OS493_000546-T1
OS493_000547-T1SI:CH211-196P9.1-RELATED
OS493_000548-T1
OS493_000549-T1
OS493_000550-T1
OS493_000551-T1
OS493_000552-T1
OS493_000553-T1
OS493_000554-T1
OS493_000555-T1TGF-BETA FAMILY
OS493_000556-T1INTELECTIN
OS493_000557-T1INTELECTIN
OS493_000560-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_000561-T1
OS493_000563-T1-
OS493_000564-T1
OS493_000565-T1TRANSMEMBRANE PROTEIN 121B
OS493_000566-T1
OS493_000567-T1
OS493_000568-T1
OS493_000569-T1
OS493_000571-T1MIGRATION AND INVASION-INHIBITORY PROTEIN
OS493_000572-T1
OS493_000574-T1PROTEIN SSUH2 HOMOLOG
OS493_000575-T1
OS493_000576-T1MATRIX METALLOPROTEINASE
OS493_000578-T1MATRIX METALLOPROTEINASE
OS493_000579-T1MATRIX METALLOPROTEINASE
OS493_000581-T1MATRIX METALLOPROTEINASE
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