About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_000208-T1
OS493_000209-T130S/40S RIBOSOMAL PROTEIN S4
OS493_000210-T1POU DOMAIN
OS493_000211-T1GLYCINE AMIDINOTRANSFERASE, MITOCHONDRIAL
OS493_000212-T1H2HPP ISOMERASE
OS493_000213-T1H2HPP ISOMERASE
OS493_000214-T1ANKYRIN REPEAT FAMILY PROTEIN
OS493_000215-T1CHAPERONIN
OS493_000216-T1CHAPERONIN
OS493_000217-T1HEADCASE PROTEIN
OS493_000218-T1SYNAPSE-ASSOCIATED PROTEIN
OS493_000219-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_000220-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_000221-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_000222-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_000223-T1PERIAXIN/AHNAK
OS493_000224-T1ENDOCHITINASE
OS493_000225-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_000226-T1FLAVIN REDUCTASE-RELATED
OS493_000227-T1
OS493_000228-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_000229-T1YCCV-LIKE DOMAIN-CONTAINING PROTEIN
OS493_000230-T1ZGC:113208
OS493_000231-T1
OS493_000232-T1RNA HELICASE
OS493_000233-T1
OS493_000234-T1
OS493_000235-T1MONOCARBOXYLATE TRANSPORTER
OS493_000236-T1ALKALINE PHOSPHATASE
OS493_000237-T14-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED
OS493_000238-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_000239-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_000240-T1
OS493_000241-T1NUCLEAR HORMONE RECEPTOR
OS493_000242-T1LIPASE
OS493_000243-T1LIPASE
OS493_000244-T1FORKHEAD BOX PROTEIN
OS493_000245-T1FORKHEAD BOX PROTEIN
OS493_000246-T1
OS493_000247-T1EG:EG0003.4 PROTEIN-RELATED
OS493_000248-T1ACYL-MALONYL CONDENSING ENZYME-RELATED
OS493_000249-T1
OS493_000251-T1DULLARD PROTEIN PHOSPHATASE
OS493_000252-T1TRANSMEMBRANE PROTEIN 201
OS493_000253-T1HEPARAN SULFATE SULFOTRANSFERASE
OS493_000254-T1
OS493_000255-T1NUCLEOLAR COMPLEX 2 AND RAD4-RELATED
OS493_000256-T1PEROXISOMAL MEMBRANE PROTEIN PEX14
OS493_000257-T1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34
OS493_000258-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
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