Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_000208-T1 | |
OS493_000209-T1 | 30S/40S RIBOSOMAL PROTEIN S4 |
OS493_000210-T1 | POU DOMAIN |
OS493_000211-T1 | GLYCINE AMIDINOTRANSFERASE, MITOCHONDRIAL |
OS493_000212-T1 | H2HPP ISOMERASE |
OS493_000213-T1 | H2HPP ISOMERASE |
OS493_000214-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
OS493_000215-T1 | CHAPERONIN |
OS493_000216-T1 | CHAPERONIN |
OS493_000217-T1 | HEADCASE PROTEIN |
OS493_000218-T1 | SYNAPSE-ASSOCIATED PROTEIN |
OS493_000219-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
OS493_000220-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
OS493_000221-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
OS493_000222-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
OS493_000223-T1 | PERIAXIN/AHNAK |
OS493_000224-T1 | ENDOCHITINASE |
OS493_000225-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
OS493_000226-T1 | FLAVIN REDUCTASE-RELATED |
OS493_000227-T1 | |
OS493_000228-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_000229-T1 | YCCV-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_000230-T1 | ZGC:113208 |
OS493_000231-T1 | |
OS493_000232-T1 | RNA HELICASE |
OS493_000233-T1 | |
OS493_000234-T1 | |
OS493_000235-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_000236-T1 | ALKALINE PHOSPHATASE |
OS493_000237-T1 | 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED |
OS493_000238-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_000239-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_000240-T1 | |
OS493_000241-T1 | NUCLEAR HORMONE RECEPTOR |
OS493_000242-T1 | LIPASE |
OS493_000243-T1 | LIPASE |
OS493_000244-T1 | FORKHEAD BOX PROTEIN |
OS493_000245-T1 | FORKHEAD BOX PROTEIN |
OS493_000246-T1 | |
OS493_000247-T1 | EG:EG0003.4 PROTEIN-RELATED |
OS493_000248-T1 | ACYL-MALONYL CONDENSING ENZYME-RELATED |
OS493_000249-T1 | |
OS493_000251-T1 | DULLARD PROTEIN PHOSPHATASE |
OS493_000252-T1 | TRANSMEMBRANE PROTEIN 201 |
OS493_000253-T1 | HEPARAN SULFATE SULFOTRANSFERASE |
OS493_000254-T1 | |
OS493_000255-T1 | NUCLEOLAR COMPLEX 2 AND RAD4-RELATED |
OS493_000256-T1 | PEROXISOMAL MEMBRANE PROTEIN PEX14 |
OS493_000257-T1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 |
OS493_000258-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |