About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_000051-T1
OS493_000052-T1
OS493_000053-T1AFADIN
OS493_000054-T1AFADIN
OS493_000055-T1AFADIN
OS493_000056-T1AFADIN
OS493_000057-T1AFADIN
OS493_000058-T1RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
OS493_000059-T1ZINC FINGER PROTEIN
OS493_000060-T1
OS493_000061-T1IMPORTIN ALPHA
OS493_000062-T1PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
OS493_000063-T1PYRIDOXAL KINASE
OS493_000064-T1PYRIDOXAL KINASE
OS493_000065-T1PIRIN-RELATED
OS493_000066-T1
OS493_000067-T1WASP-1
OS493_000068-T1MALIC ENZYME-RELATED
OS493_000069-T1
OS493_000070-T1ACETYL-COA C-ACYLTRANSFERASE
OS493_000071-T1
OS493_000072-T1ANKYRIN REPEAT FAMILY PROTEIN
OS493_000073-T1
OS493_000074-T1PROPERDIN
OS493_000075-T1COLLAGEN ALPHA
OS493_000076-T1COLLAGEN ALPHA
OS493_000077-T1COLLAGEN ALPHA
OS493_000078-T1
OS493_000079-T1EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1
OS493_000080-T1EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1
OS493_000081-T1EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1
OS493_000082-T1ENDO-ALPHA-1,2-MANNOSIDASE
OS493_000083-T1ENDO-ALPHA-1,2-MANNOSIDASE
OS493_000084-T1EIF-1A
OS493_000085-T1LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD
OS493_000086-T1N4BP1-RELATED
OS493_000087-T1
OS493_000088-T1PREFOLDIN SUBUNIT 3
OS493_000089-T1INHIBITOR OF APOPTOSIS
OS493_000090-T1INHIBITOR OF APOPTOSIS
OS493_000091-T1EXPORTIN 4,7-RELATED
OS493_000092-T1EXPORTIN 4,7-RELATED
OS493_000093-T1SODIUM/NUCLEOSIDE COTRANSPORTER
OS493_000094-T1SODIUM/NUCLEOSIDE COTRANSPORTER
OS493_000095-T1SODIUM/NUCLEOSIDE COTRANSPORTER
OS493_000096-T1METAL TRANSPORTER CNNM
OS493_000097-T1DNA POLYMERASE TYPE-X FAMILY MEMBER
OS493_000098-T1DNA POLYMERASE TYPE-X FAMILY MEMBER
OS493_000099-T1STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6
OS493_000100-T1
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