About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_000840-T1SERINE-THREONINE PROTEIN KINASE
OS493_000841-T1
OS493_000842-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_000843-T1
OS493_000844-T1
OS493_000845-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_000846-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_000847-T1
OS493_000848-T1
OS493_000849-T1
OS493_000850-T1
OS493_000851-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_000852-T1
OS493_000853-T1
OS493_000854-T1
OS493_000855-T1
OS493_000856-T1ACTIVATOR OF S-PHASE KINASE-RELATED
OS493_000857-T1
OS493_000858-T1
OS493_000859-T1PHOSPHATIDYLINOSITOL SYNTHASE
OS493_000860-T1MYOSIN HEAVY CHAIN, NON-MUSCLE
OS493_000861-T1
OS493_000862-T1GREB1-RELATED
OS493_000863-T1
OS493_000864-T1GREB1-RELATED
OS493_000865-T1
OS493_000866-T1
OS493_000867-T1GREB1-RELATED
OS493_000868-T1GREB1-RELATED
OS493_000869-T1GREB1-RELATED
OS493_000870-T1
OS493_000871-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_000872-T1AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE
OS493_000873-T1
OS493_000874-T1SOX TRANSCRIPTION FACTOR
OS493_000875-T1ADP-RIBOSYLATION FACTOR-RELATED PROTEIN 1
OS493_000876-T1
OS493_000877-T1
OS493_000878-T1
OS493_000879-T1
OS493_000880-T1REGULATORY PROTEIN ZESTE
OS493_000881-T1REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN
OS493_000882-T1
OS493_000883-T1REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN
OS493_000884-T1
OS493_000885-T1MULTICOPPER OXIDASE-RELATED
OS493_000886-T1
OS493_000887-T1IONOTROPIC GLUTAMATE RECEPTOR
OS493_000888-T1OPSIN
OS493_000889-T1IONOTROPIC GLUTAMATE RECEPTOR
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