Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_001051-T1 | |
OS493_001052-T1 | |
OS493_001053-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
OS493_001054-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
OS493_001055-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
OS493_001056-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
OS493_001057-T1 | |
OS493_001058-T1 | CENTROMERE PROTEIN V |
OS493_001060-T1 | TRANSMEMBRANE PROTEIN 65 |
OS493_001061-T1 | |
OS493_001062-T1 | |
OS493_001063-T1 | |
OS493_001064-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_001065-T1 | SYNAPSE-ASSOCIATED PROTEIN |
OS493_001066-T1 | |
OS493_001067-T1 | |
OS493_001068-T1 | |
OS493_001069-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_001070-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
OS493_001071-T1 | |
OS493_001072-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_001073-T1 | MEIOTIC RECOMBINATION PROTEIN SPO11 |
OS493_001074-T1 | MEIOTIC RECOMBINATION PROTEIN SPO11 |
OS493_001075-T1 | VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28 |
OS493_001076-T1 | UPF0573 PROTEIN C2ORF70 |
OS493_001077-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_001078-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 178 |
OS493_001079-T1 | |
OS493_001080-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_001081-T1 | |
OS493_001082-T1 | |
OS493_001083-T1 | |
OS493_001084-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
OS493_001085-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
OS493_001086-T1 | |
OS493_001087-T1 | |
OS493_001088-T1 | G PROTEIN PATHWAY SUPPRESSOR 2 |
OS493_001089-T1 | |
OS493_001090-T1 | |
OS493_001091-T1 | UNCHARACTERIZED |
OS493_001092-T1 | UNCHARACTERIZED |
OS493_001093-T1 | |
OS493_001094-T1 | VACUOLAR CALCIUM ION TRANSPORTER |
OS493_001095-T1 | VACUOLAR CALCIUM ION TRANSPORTER |
OS493_001096-T1 | TRANSFERRIN |
OS493_001097-T1 | |
OS493_001098-T1 | |
OS493_001099-T1 | TRANSFERRIN |
OS493_001100-T1 | TRANSFERRIN |
OS493_001101-T1 |