About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_001051-T1
OS493_001052-T1
OS493_001053-T1CYSTEINE PROTEASE FAMILY C1-RELATED
OS493_001054-T1CYSTEINE PROTEASE FAMILY C1-RELATED
OS493_001055-T1CYSTEINE PROTEASE FAMILY C1-RELATED
OS493_001056-T1CYSTEINE PROTEASE FAMILY C1-RELATED
OS493_001057-T1
OS493_001058-T1CENTROMERE PROTEIN V
OS493_001060-T1TRANSMEMBRANE PROTEIN 65
OS493_001061-T1
OS493_001062-T1
OS493_001063-T1
OS493_001064-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_001065-T1SYNAPSE-ASSOCIATED PROTEIN
OS493_001066-T1
OS493_001067-T1
OS493_001068-T1
OS493_001069-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_001070-T1CYSTEINE PROTEASE FAMILY C1-RELATED
OS493_001071-T1
OS493_001072-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_001073-T1MEIOTIC RECOMBINATION PROTEIN SPO11
OS493_001074-T1MEIOTIC RECOMBINATION PROTEIN SPO11
OS493_001075-T1VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28
OS493_001076-T1UPF0573 PROTEIN C2ORF70
OS493_001077-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_001078-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 178
OS493_001079-T1
OS493_001080-T1MULTICOPPER OXIDASE-RELATED
OS493_001081-T1
OS493_001082-T1
OS493_001083-T1
OS493_001084-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_001085-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_001086-T1
OS493_001087-T1
OS493_001088-T1G PROTEIN PATHWAY SUPPRESSOR 2
OS493_001089-T1
OS493_001090-T1
OS493_001091-T1UNCHARACTERIZED
OS493_001092-T1UNCHARACTERIZED
OS493_001093-T1
OS493_001094-T1VACUOLAR CALCIUM ION TRANSPORTER
OS493_001095-T1VACUOLAR CALCIUM ION TRANSPORTER
OS493_001096-T1TRANSFERRIN
OS493_001097-T1
OS493_001098-T1
OS493_001099-T1TRANSFERRIN
OS493_001100-T1TRANSFERRIN
OS493_001101-T1
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