Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_001207-T1 | |
OS493_001208-T1 | |
OS493_001209-T1 | |
OS493_001210-T1 | |
OS493_001211-T1 | ZINC FINGER PROTEIN ZIC AND GLI |
OS493_001212-T1 | |
OS493_001213-T1 | RADIAL SPOKE HEAD 10 HOMOLOG B-RELATED |
OS493_001214-T1 | |
OS493_001215-T1 | BTB/POZ DOMAIN-CONTAINING |
OS493_001216-T1 | CYSTEINYL-TRNA SYNTHETASE |
OS493_001217-T1 | CYSTEINYL-TRNA SYNTHETASE |
OS493_001218-T1 | - |
OS493_001219-T1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD |
OS493_001220-T1 | ANKYRIN DOMAIN-CONTAINING |
OS493_001221-T1 | |
OS493_001223-T1 | |
OS493_001224-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_001225-T1 | |
OS493_001226-T1 | KINESIN-LIKE PROTEIN KLP-3 |
OS493_001227-T1 | KINESIN-LIKE PROTEIN KLP-3 |
OS493_001228-T1 | |
OS493_001229-T1 | |
OS493_001230-T1 | |
OS493_001231-T1 | G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN |
OS493_001232-T1 | SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1 |
OS493_001233-T1 | SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT |
OS493_001235-T1 | |
OS493_001236-T1 | |
OS493_001237-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_001238-T1 | |
OS493_001239-T1 | |
OS493_001240-T1 | SYNAPTONEMAL COMPLEX PROTEIN-RELATED |
OS493_001241-T1 | ANTIGEN MLAA-22-RELATED |
OS493_001242-T1 | ANTIGEN MLAA-22-RELATED |
OS493_001243-T1 | |
OS493_001244-T1 | |
OS493_001245-T1 | |
OS493_001246-T1 | SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL |
OS493_001247-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
OS493_001248-T1 | NYD-SP28 PROTEIN |
OS493_001249-T1 | L-ASPARTATE DEHYDROGENASE-RELATED |
OS493_001250-T1 | |
OS493_001251-T1 | AAA DOMAIN-CONTAINING |
OS493_001253-T1 | |
OS493_001254-T1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
OS493_001255-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14 |
OS493_001256-T1 | N-LYSINE METHYLTRANSFERASE KMT5A |
OS493_001258-T1 | X-BOX BINDING PROTEIN 1 |
OS493_001259-T1 | PEROXISOMAL SARCOSINE OXIDASE |
OS493_001260-T1 | MAJOR VAULT PROTEIN |