About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_001315-T1E3 UBIQUITIN-PROTEIN LIGASE TRIM37
OS493_001316-T1
OS493_001317-T1
OS493_001318-T1
OS493_001319-T1
OS493_001321-T1PROTEIN PHOSPHATASE
OS493_001322-T1PROTEIN PHOSPHATASE 2C
OS493_001323-T1
OS493_001324-T1
OS493_001325-T1
OS493_001326-T1
OS493_001327-T1
OS493_001328-T1CARBONIC ANHYDRASE
OS493_001329-T1
OS493_001330-T1CARBONIC ANHYDRASE
OS493_001331-T1CARBONIC ANHYDRASE
OS493_001332-T1
OS493_001333-T1DNA2/NAM7 HELICASE FAMILY
OS493_001334-T1
OS493_001335-T1
OS493_001336-T1
OS493_001337-T1
OS493_001338-T1
OS493_001339-T1
OS493_001340-T1
OS493_001341-T1
OS493_001342-T1
OS493_001343-T1
OS493_001344-T1
OS493_001345-T1
OS493_001346-T1TELOMERE REPEAT-BINDING FACTOR 2-INTERACTING PROTEIN 1
OS493_001347-T1
OS493_001348-T1
OS493_001349-T1
OS493_001350-T1
OS493_001351-T1
OS493_001352-T1
OS493_001353-T1
OS493_001354-T1DAZ-ASSOCIATED PROTEIN 2
OS493_001355-T1DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED
OS493_001356-T1ETS
OS493_001357-T1
OS493_001358-T1SCLEROSTIN-RELATED
OS493_001359-T1CULLIN
OS493_001360-T1SI:DKEY-256H2.1
OS493_001361-T1
OS493_001363-T1HOMEOBOX PROTEIN NKX
OS493_001364-T1HOMEOBOX PROTEIN NKX
OS493_001365-T1PEROXISOMAL TRANS-2-ENOYL-COA REDUCTASE
OS493_001366-T1CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3
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