About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_001587-T1
OS493_001588-T1U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 4 HOMOLOG
OS493_001590-T1
OS493_001591-T1VERTNIN
OS493_001592-T1
OS493_001593-T1
OS493_001594-T1
OS493_001595-T1
OS493_001596-T1
OS493_001597-T1
OS493_001598-T1
OS493_001599-T1
OS493_001600-T1FUKUTIN RELATED PROTEIN
OS493_001601-T1
OS493_001602-T1
OS493_001603-T1
OS493_001604-T1
OS493_001605-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_001606-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_001607-T1
OS493_001608-T1
OS493_001609-T1ORF PROTEIN
OS493_001610-T1DNA REPAIR/RNA PROCESSING CPSF FAMILY
OS493_001611-T1DNA REPAIR/RNA PROCESSING CPSF FAMILY
OS493_001612-T1
OS493_001613-T1
OS493_001618-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 189
OS493_001619-T1
OS493_001620-T1
OS493_001621-T1
OS493_001622-T1
OS493_001625-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 27
OS493_001626-T1
OS493_001627-T1VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN
OS493_001628-T1THREE PRIME REPAIR EXONUCLEASE 1, 2
OS493_001629-T1
OS493_001631-T1ENDOSOME-ASSOCIATED TRAFFICKING REGULATOR 1
OS493_001632-T1
OS493_001633-T1
OS493_001634-T1UPF0573 PROTEIN C2ORF70
OS493_001635-T1
OS493_001639-T1HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
OS493_001640-T1
OS493_001641-T1COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER
OS493_001642-T1CAS SCAFFOLDING PROTEIN
OS493_001643-T1CAS SCAFFOLDING PROTEIN
OS493_001644-T1UNCHARACTERIZED
OS493_001645-T1MITOCHONDRIAL METAL TRANSPORTER 1-RELATED
OS493_001646-T1PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING
OS493_001647-T1
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