Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_001534-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 |
OS493_001535-T1 | HOMEOBOX PROTEIN ARISTALESS |
OS493_001536-T1 | IMPORTIN ALPHA |
OS493_001537-T1 | |
OS493_001538-T1 | SH2 DOMAIN-CONTAINING PROTEIN |
OS493_001539-T1 | |
OS493_001540-T1 | |
OS493_001541-T1 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
OS493_001542-T1 | |
OS493_001544-T1 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
OS493_001545-T1 | |
OS493_001546-T1 | ACROSIN-RELATED |
OS493_001547-T1 | |
OS493_001548-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_001549-T1 | |
OS493_001550-T1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
OS493_001551-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_001552-T1 | |
OS493_001553-T1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
OS493_001554-T1 | |
OS493_001555-T1 | |
OS493_001556-T1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
OS493_001558-T1 | SRCR DOMAIN-CONTAINING PROTEIN |
OS493_001559-T1 | SRCR DOMAIN-CONTAINING PROTEIN |
OS493_001560-T1 | |
OS493_001561-T1 | |
OS493_001562-T1 | 2-HACID_DH_C DOMAIN-CONTAINING PROTEIN |
OS493_001563-T1 | |
OS493_001564-T1 | NOTCH LIGAND FAMILY MEMBER |
OS493_001565-T1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
OS493_001566-T1 | TETRASPANIN |
OS493_001567-T1 | |
OS493_001568-T1 | UNCHARACTERIZED |
OS493_001569-T1 | |
OS493_001570-T1 | |
OS493_001571-T1 | |
OS493_001572-T1 | N-ALPHA-ACETYLTRANSFERASE |
OS493_001573-T1 | VACUOLAR PROTEIN SORTING 26 RELATED |
OS493_001574-T1 | VACUOLAR PROTEIN SORTING 26 RELATED |
OS493_001575-T1 | |
OS493_001576-T1 | FUKUTIN RELATED PROTEIN |
OS493_001577-T1 | B-CELL LYMPHOMA/LEUKEMIA 11 |
OS493_001578-T1 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
OS493_001579-T1 | |
OS493_001580-T1 | |
OS493_001581-T1 | |
OS493_001582-T1 | ANAMORSIN |
OS493_001584-T1 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE |
OS493_001585-T1 | NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
OS493_001586-T1 |