About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_001534-T1TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11
OS493_001535-T1HOMEOBOX PROTEIN ARISTALESS
OS493_001536-T1IMPORTIN ALPHA
OS493_001537-T1
OS493_001538-T1SH2 DOMAIN-CONTAINING PROTEIN
OS493_001539-T1
OS493_001540-T1
OS493_001541-T1E3 UBIQUITIN-PROTEIN LIGASE TRIP12
OS493_001542-T1
OS493_001544-T1E3 UBIQUITIN-PROTEIN LIGASE TRIP12
OS493_001545-T1
OS493_001546-T1ACROSIN-RELATED
OS493_001547-T1
OS493_001548-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_001549-T1
OS493_001550-T1ADENOSINE/GUANOSINE DIPHOSPHATASE
OS493_001551-T1LEUCOKININ RECEPTOR-RELATED
OS493_001552-T1
OS493_001553-T1ADENOSINE/GUANOSINE DIPHOSPHATASE
OS493_001554-T1
OS493_001555-T1
OS493_001556-T1ADENOSINE/GUANOSINE DIPHOSPHATASE
OS493_001558-T1SRCR DOMAIN-CONTAINING PROTEIN
OS493_001559-T1SRCR DOMAIN-CONTAINING PROTEIN
OS493_001560-T1
OS493_001561-T1
OS493_001562-T12-HACID_DH_C DOMAIN-CONTAINING PROTEIN
OS493_001563-T1
OS493_001564-T1NOTCH LIGAND FAMILY MEMBER
OS493_001565-T1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
OS493_001566-T1TETRASPANIN
OS493_001567-T1
OS493_001568-T1UNCHARACTERIZED
OS493_001569-T1
OS493_001570-T1
OS493_001571-T1
OS493_001572-T1N-ALPHA-ACETYLTRANSFERASE
OS493_001573-T1VACUOLAR PROTEIN SORTING 26 RELATED
OS493_001574-T1VACUOLAR PROTEIN SORTING 26 RELATED
OS493_001575-T1
OS493_001576-T1FUKUTIN RELATED PROTEIN
OS493_001577-T1B-CELL LYMPHOMA/LEUKEMIA 11
OS493_001578-T1MYOSIN HEAVY CHAIN, NON-MUSCLE
OS493_001579-T1
OS493_001580-T1
OS493_001581-T1
OS493_001582-T1ANAMORSIN
OS493_001584-T1MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE
OS493_001585-T1NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING
OS493_001586-T1
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