Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_001701-T1 | PROTEASOME SUBUNIT ALPHA/BETA |
OS493_001702-T1 | PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_001703-T1 | |
OS493_001705-T1 | SOX TRANSCRIPTION FACTOR |
OS493_001706-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
OS493_001707-T1 | PROTEIN FAM91A1 |
OS493_001708-T1 | |
OS493_001709-T1 | PROTEIN FAM91A1 |
OS493_001710-T1 | PROTEIN FAM91A1 |
OS493_001711-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
OS493_001712-T1 | |
OS493_001713-T1 | PROTEIN FAM91A1 |
OS493_001714-T1 | |
OS493_001715-T1 | PROTEIN FAM91A1 |
OS493_001716-T1 | PROTEIN FAM91A1 |
OS493_001717-T1 | PROTEIN FAM91A1 |
OS493_001718-T1 | PROTEIN FAM91A1 |
OS493_001719-T1 | TRANSMEMBRANE PROTEIN 14, 15 |
OS493_001720-T1 | TRANSCRIPTION ELONGATION FACTOR A |
OS493_001721-T1 | |
OS493_001722-T1 | |
OS493_001723-T1 | MRNA EXPORT FACTOR AND BUB3 |
OS493_001724-T1 | CALCIUM BINDING PROTEINS |
OS493_001725-T1 | CALCIUM BINDING PROTEINS |
OS493_001726-T1 | CALCIUM BINDING PROTEINS |
OS493_001727-T1 | D-ALANYL-D-ALANINE CARBOXYPEPTIDASE |
OS493_001728-T1 | |
OS493_001729-T1 | CALCIUM BINDING PROTEINS |
OS493_001730-T1 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
OS493_001731-T1 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
OS493_001732-T1 | MYELIN TRANSCRIPTION FACTOR 1-RELATED |
OS493_001733-T1 | NACHT, LRR AND CARD DOMAINS-CONTAINING |
OS493_001734-T1 | NACHT, LRR AND CARD DOMAINS-CONTAINING |
OS493_001735-T1 | |
OS493_001736-T1 | MYELIN TRANSCRIPTION FACTOR 1-RELATED |
OS493_001738-T1 | - |
OS493_001739-T1 | |
OS493_001740-T1 | |
OS493_001741-T1 | |
OS493_001742-T1 | HISTONE H1 |
OS493_001744-T1 | MONOACYLGLYCEROL LIPASE |
OS493_001745-T1 | |
OS493_001746-T1 | |
OS493_001747-T1 | |
OS493_001748-T1 | |
OS493_001749-T1 | |
OS493_001750-T1 | CCAAT DISPLACEMENT PROTEIN-RELATED |
OS493_001751-T1 | RPA-INTERACTING PROTEIN RPAIN |
OS493_001752-T1 | SH2B ADAPTER PROTEIN |
OS493_001753-T1 | SH2B ADAPTER PROTEIN |