Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_001648-T1 | KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED |
OS493_001649-T1 | D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL |
OS493_001650-T1 | D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL |
OS493_001651-T1 | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 61F |
OS493_001652-T1 | PHOSPHOENOLPYRUVATE CARBOXYKINASE |
OS493_001653-T1 | PHOSPHOENOLPYRUVATE CARBOXYKINASE |
OS493_001654-T1 | PHOSPHOENOLPYRUVATE CARBOXYKINASE |
OS493_001655-T1 | NIBRIN-RELATED |
OS493_001656-T1 | NIBRIN-RELATED |
OS493_001657-T1 | |
OS493_001658-T1 | |
OS493_001659-T1 | |
OS493_001660-T1 | |
OS493_001661-T1 | RADIAL SPOKEHEAD-RELATED |
OS493_001662-T1 | RADIAL SPOKEHEAD-RELATED |
OS493_001663-T1 | EXOCYST COMPLEX COMPONENT SEC5 |
OS493_001664-T1 | |
OS493_001665-T1 | MITOCHONDRIAL GENOME MAINTENANCE PROTEIN MGM101 |
OS493_001666-T1 | PROTEIN NAKED CUTICLE |
OS493_001667-T1 | IODOTHYRONINE DEIODINASE |
OS493_001668-T1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR-RELATED |
OS493_001669-T1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
OS493_001670-T1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
OS493_001671-T1 | UNCHARACTERIZED |
OS493_001672-T1 | |
OS493_001673-T1 | IMPORTIN ALPHA |
OS493_001674-T1 | PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN |
OS493_001675-T1 | |
OS493_001676-T1 | DNA REPAIR-SCAFFOLDING PROTEIN SPIDR |
OS493_001678-T1 | ADENOMATOSIS POLYPOSIS COLI DOWN-REGULATED 1 |
OS493_001679-T1 | |
OS493_001680-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_001682-T1 | |
OS493_001683-T1 | CADHERIN-23 |
OS493_001684-T1 | |
OS493_001685-T1 | |
OS493_001686-T1 | PROTEIN FAM91A1 |
OS493_001687-T1 | |
OS493_001688-T1 | PROTEIN FAM91A1 |
OS493_001689-T1 | PROTEIN FAM91A1 |
OS493_001690-T1 | PROTEIN FAM91A1 |
OS493_001691-T1 | |
OS493_001692-T1 | PROTEIN FAM91A1 |
OS493_001693-T1 | PROTEIN FAM91A1 |
OS493_001694-T1 | |
OS493_001695-T1 | REGULATOR OF G PROTEIN SIGNALING |
OS493_001696-T1 | LEUCINE REPEAT ADAPTER PROTEIN 25 |
OS493_001697-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_001698-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_001700-T1 |