About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_001969-T1UNHEALTHY RIBOSOME BIOGENESIS PROTEIN 2 HOMOLOG
OS493_001970-T1UNHEALTHY RIBOSOME BIOGENESIS PROTEIN 2 HOMOLOG
OS493_001971-T1SIGMA 1-TYPE OPIOID RECEPTOR-RELATED
OS493_001972-T1
OS493_001973-T1
OS493_001974-T1RAS GTPASE-RELATED
OS493_001975-T1
OS493_001976-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
OS493_001977-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
OS493_001978-T1CD59 GLYCOPROTEIN
OS493_001979-T1
OS493_001980-T1
OS493_001982-T1
OS493_001983-T1SER/THR-RICH PROTEIN T10 IN DGCR REGION
OS493_001984-T1URINARY PROTEIN RUP /ACROSOMAL PROTEIN SP-10
OS493_001985-T1SER/THR-RICH PROTEIN T10 IN DGCR REGION
OS493_001986-T1HISTONE H1
OS493_001987-T1WD-REPEATCONTAINING PROTEIN WDR1
OS493_001988-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_001989-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_001990-T1
OS493_001991-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_001992-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_001993-T1HISTONE H1
OS493_001994-T1
OS493_001995-T1
OS493_001996-T1WD-REPEATCONTAINING PROTEIN WDR1
OS493_001997-T1LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN
OS493_001998-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_001999-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_002000-T1NY-REN-58 ANTIGEN
OS493_002002-T1DEOXYCYTIDYLATE DEAMINASE-RELATED
OS493_002004-T1GABA-B RECEPTOR
OS493_002005-T1GABA-B RECEPTOR
OS493_002006-T1
OS493_002007-T1EXPRESSED PROTEIN
OS493_002008-T1
OS493_002009-T1CXC2 DOMAIN-CONTAINING PROTEIN
OS493_002010-T1
OS493_002011-T1
OS493_002012-T1
OS493_002013-T1
OS493_002014-T1
OS493_002015-T1
OS493_002016-T1
OS493_002017-T1
OS493_002018-T1
OS493_002019-T1
OS493_002020-T1
OS493_002021-T1
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