Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_001969-T1 | UNHEALTHY RIBOSOME BIOGENESIS PROTEIN 2 HOMOLOG |
OS493_001970-T1 | UNHEALTHY RIBOSOME BIOGENESIS PROTEIN 2 HOMOLOG |
OS493_001971-T1 | SIGMA 1-TYPE OPIOID RECEPTOR-RELATED |
OS493_001972-T1 | |
OS493_001973-T1 | |
OS493_001974-T1 | RAS GTPASE-RELATED |
OS493_001975-T1 | |
OS493_001976-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_001977-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_001978-T1 | CD59 GLYCOPROTEIN |
OS493_001979-T1 | |
OS493_001980-T1 | |
OS493_001982-T1 | |
OS493_001983-T1 | SER/THR-RICH PROTEIN T10 IN DGCR REGION |
OS493_001984-T1 | URINARY PROTEIN RUP /ACROSOMAL PROTEIN SP-10 |
OS493_001985-T1 | SER/THR-RICH PROTEIN T10 IN DGCR REGION |
OS493_001986-T1 | HISTONE H1 |
OS493_001987-T1 | WD-REPEATCONTAINING PROTEIN WDR1 |
OS493_001988-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_001989-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_001990-T1 | |
OS493_001991-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_001992-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_001993-T1 | HISTONE H1 |
OS493_001994-T1 | |
OS493_001995-T1 | |
OS493_001996-T1 | WD-REPEATCONTAINING PROTEIN WDR1 |
OS493_001997-T1 | LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN |
OS493_001998-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_001999-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_002000-T1 | NY-REN-58 ANTIGEN |
OS493_002002-T1 | DEOXYCYTIDYLATE DEAMINASE-RELATED |
OS493_002004-T1 | GABA-B RECEPTOR |
OS493_002005-T1 | GABA-B RECEPTOR |
OS493_002006-T1 | |
OS493_002007-T1 | EXPRESSED PROTEIN |
OS493_002008-T1 | |
OS493_002009-T1 | CXC2 DOMAIN-CONTAINING PROTEIN |
OS493_002010-T1 | |
OS493_002011-T1 | |
OS493_002012-T1 | |
OS493_002013-T1 | |
OS493_002014-T1 | |
OS493_002015-T1 | |
OS493_002016-T1 | |
OS493_002017-T1 | |
OS493_002018-T1 | |
OS493_002019-T1 | |
OS493_002020-T1 | |
OS493_002021-T1 |