Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_002360-T1 | |
OS493_002361-T1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
OS493_002362-T1 | INSULIN RECEPTOR SUBSTRATE |
OS493_002363-T1 | PUTATIVE HOMEODOMAIN TRANSCRIPTION FACTOR PHTF |
OS493_002364-T1 | |
OS493_002365-T1 | |
OS493_002366-T1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
OS493_002367-T1 | |
OS493_002368-T1 | |
OS493_002369-T1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
OS493_002370-T1 | |
OS493_002371-T1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
OS493_002372-T1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
OS493_002373-T1 | |
OS493_002374-T1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
OS493_002375-T1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
OS493_002376-T1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
OS493_002378-T1 | |
OS493_002379-T1 | ARMADILLO-TYPE FOLD |
OS493_002380-T1 | NADH-UBIQUINONE OXIDOREDUCTASE MLRQ SUBUNIT |
OS493_002381-T1 | NADH-UBIQUINONE OXIDOREDUCTASE MLRQ SUBUNIT |
OS493_002382-T1 | 39S RIBOSOMAL PROTEIN L45, MITOCHONDRIAL |
OS493_002383-T1 | BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN |
OS493_002384-T1 | ACYL-COA-BINDING PROTEIN, ACBP |
OS493_002385-T1 | HYPOTHETICAL PROTEIN LOC689986 |
OS493_002386-T1 | TRAF3-INTERACTING PROTEIN 1 |
OS493_002387-T1 | RNA-BINDING PROTEIN 33 |
OS493_002388-T1 | |
OS493_002389-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
OS493_002390-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
OS493_002391-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
OS493_002392-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
OS493_002393-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
OS493_002394-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
OS493_002395-T1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
OS493_002396-T1 | 60S RIBOSOMAL PROTEIN L24 |
OS493_002399-T1 | SEMAPHORIN |
OS493_002400-T1 | COMM DOMAIN CONTAINING PROTEIN 10 |
OS493_002401-T1 | UBIQUILIN |
OS493_002402-T1 | UBIQUILIN |
OS493_002403-T1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
OS493_002404-T1 | G KINASE ANCHORING PROTEIN 1 |
OS493_002405-T1 | RIBOSOMAL PROTEIN S19P FAMILY MEMBER |
OS493_002406-T1 | |
OS493_002407-T1 | UTP15 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 FAMILY MEMBER |
OS493_002408-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
OS493_002409-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
OS493_002410-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
OS493_002411-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
OS493_002412-T1 | FORKHEAD BOX PROTEIN |