About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002360-T1
OS493_002361-T1ATP-DEPENDENT RNA HELICASE RHLE-RELATED
OS493_002362-T1INSULIN RECEPTOR SUBSTRATE
OS493_002363-T1PUTATIVE HOMEODOMAIN TRANSCRIPTION FACTOR PHTF
OS493_002364-T1
OS493_002365-T1
OS493_002366-T1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
OS493_002367-T1
OS493_002368-T1
OS493_002369-T1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
OS493_002370-T1
OS493_002371-T1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
OS493_002372-T1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
OS493_002373-T1
OS493_002374-T1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
OS493_002375-T1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
OS493_002376-T1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
OS493_002378-T1
OS493_002379-T1ARMADILLO-TYPE FOLD
OS493_002380-T1NADH-UBIQUINONE OXIDOREDUCTASE MLRQ SUBUNIT
OS493_002381-T1NADH-UBIQUINONE OXIDOREDUCTASE MLRQ SUBUNIT
OS493_002382-T139S RIBOSOMAL PROTEIN L45, MITOCHONDRIAL
OS493_002383-T1BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN
OS493_002384-T1ACYL-COA-BINDING PROTEIN, ACBP
OS493_002385-T1HYPOTHETICAL PROTEIN LOC689986
OS493_002386-T1TRAF3-INTERACTING PROTEIN 1
OS493_002387-T1RNA-BINDING PROTEIN 33
OS493_002388-T1
OS493_002389-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
OS493_002390-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
OS493_002391-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
OS493_002392-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
OS493_002393-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
OS493_002394-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
OS493_002395-T1ARRESTIN DOMAIN CONTAINING PROTEIN
OS493_002396-T160S RIBOSOMAL PROTEIN L24
OS493_002399-T1SEMAPHORIN
OS493_002400-T1COMM DOMAIN CONTAINING PROTEIN 10
OS493_002401-T1UBIQUILIN
OS493_002402-T1UBIQUILIN
OS493_002403-T1ATP-DEPENDENT RNA HELICASE RHLE-RELATED
OS493_002404-T1G KINASE ANCHORING PROTEIN 1
OS493_002405-T1RIBOSOMAL PROTEIN S19P FAMILY MEMBER
OS493_002406-T1
OS493_002407-T1UTP15 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 FAMILY MEMBER
OS493_002408-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
OS493_002409-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
OS493_002410-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
OS493_002411-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
OS493_002412-T1FORKHEAD BOX PROTEIN
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