About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002413-T1BTK-BINDING PROTEIN-RELATED
OS493_002414-T1REGULATOR OF CHROMOSOME CONDENSATION
OS493_002415-T1E3 UBIQUITIN-PROTEIN LIGASE HECTD3
OS493_002416-T1SORTING NEXIN 17 AND 27
OS493_002417-T1SERINE-THREONINE PROTEIN KINASE
OS493_002418-T1
OS493_002419-T1UNCHARACTERIZED
OS493_002420-T1SMALL NUCLEAR RIBONUCLEOPROTEIN SM
OS493_002421-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_002422-T1MULTI-COPPER OXIDASE
OS493_002423-T1
OS493_002424-T1
OS493_002425-T1
OS493_002426-T1-
OS493_002428-T1BILE ACID BETA-GLUCOSIDASE-RELATED
OS493_002429-T1
OS493_002430-T1
OS493_002431-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
OS493_002432-T1
OS493_002433-T1NETRIN/LAMININ-RELATED
OS493_002434-T1NETRIN/LAMININ-RELATED
OS493_002435-T1NETRIN/LAMININ-RELATED
OS493_002436-T1PIKACHURIN-LIKE PROTEIN
OS493_002437-T1PIKACHURIN-LIKE PROTEIN
OS493_002438-T1
OS493_002439-T1
OS493_002440-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_002441-T1
OS493_002442-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_002443-T1
OS493_002444-T1BTK-BINDING PROTEIN-RELATED
OS493_002445-T1
OS493_002446-T1SEMAPHORIN
OS493_002447-T1
OS493_002448-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_002449-T1
OS493_002450-T1
OS493_002451-T1
OS493_002452-T1MEF2B PROTEIN
OS493_002453-T1
OS493_002454-T1IMPORTIN-7, 8, 11
OS493_002455-T1NEUROGENIC PROTEIN MASTERMIND
OS493_002456-T1UNCHARACTERIZED
OS493_002457-T1UNCHARACTERIZED
OS493_002458-T1UNCHARACTERIZED
OS493_002459-T1UNCHARACTERIZED
OS493_002460-T1
OS493_002461-T1-
OS493_002462-T1PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE
OS493_002463-T1PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE
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